PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62026261-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30552.2 Da    PI: 4.7367
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62026261-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-193789456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++t+eq+e Le+ F  ++ +  e++ +LAk +gL+ rqV+vWFqNrRa++k
  AUR62026261-RA 37 KRRLTPEQVEFLEKSFDADNRLEPERKVHLAKTIGLQPRQVSVWFQNRRARHK 89
                    5689***********************************************99 PP
2HD-ZIP_I/II119.91.3e-3836126292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl+ eqv++LE+sF+++++LeperKv+la+++glqprqv vWFqnrRAR+ktk +Ek++ +Lk++y++lk + ++L ke+e+L++e++
  AUR62026261-RA  36 KKRRLTPEQVEFLEKSFDADNRLEPERKVHLAKTIGLQPRQVSVWFQNRRARHKTKLVEKEFGSLKDSYNSLKVDYDSLIKENENLKNEVE 126
                     9**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MNPKRYRSDE LFAGTVNVED ISEDELDANL FNNSVKKRRL TPEQVEFLEK SFDADNRLEP  60
ERKVHLAKTI GLQPRQVSVW FQNRRARHKT KLVEKEFGSL KDSYNSLKVD YDSLIKENEN  120
LKNEVEMYKN LLKMEGRSIN SSPINTPPFE DEGTMKIESR RKVEIVAKSD ILDYDSPPYT  180
IVNQSAAIVE TSSTLIMRDP DQQSVFAQED HMMMTKSLLL PQSPPTYNNF LEVPDDDKNY  240
DPNNANTCNF SLVDNQPNWC WLY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-35HD-ZIP family protein