PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026026-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 284aa MW: 31008.2 Da PI: 8.4591

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026026-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	217	239	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L+ H ++ H AUR62026026-RA 217 VCPQCNARFSSVTALVEHVQKaH 239 6******************9988 PP
2	zf-C2H2	15.2	6.2e-05	256	277	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C++ F+++ L+ H + H AUR62026026-RA 256 CPKCSRGFTDPVALVEHVEKeH 277 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MGTPAFPNLG KHCSVDDCKQ IDFLPFTCDR CDQVYCLEHR SYKQHRCPHG DNQGVTVVIC 60 PLCAKGVRLK PDEDPNITWE SHVNTICDPK NYEKVTKKRK CPVVGCKEIL VFSNTVKCKD 120 CSTDHCLKHR FGPDHKCPGP PKSNTGFPFM GLLTSSSRKE VPRPKAPVQS TSSVWSRFVN 180 AAETGMAKLS NDFNQVLQVG QGSKNSSNSG GSGGQEVCPQ CNARFSSVTA LVEHVQKAHE 240 KSNNCMGVRK STIDACPKCS RGFTDPVALV EHVEKEHGGT SRA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-119	C2H2 family protein