PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62024411-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 676aa MW: 74045.6 Da PI: 6.351

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62024411-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg AUR62024411-RA 280 PCPDFRK-GACRRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MNNLTVETLD TFSSLLEVSA NNDVEAFKRL IEDDPAGIDE PGLWYVRKKG SKQMVYEHRT 60 PLMVASIYGS MDVLKLIISL SVTDVNRSCG EDKSTALHCA ASGGSVNAVD VVRLLLEAGA 120 DHNALDANGN RPFDVIMVSP RQNDVKSALE ELLAGHGSIS ERILRLPSAT SNSNSPPLSS 180 SPVNGSPSSY SDSPPSPINS KFDDIQATSY AAEKKEYPID PSIPDIKNSI YATDEFRMYS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGP SCARRVCFFA HIPEELRPLY VSTGSAVPSP RSSASSSMDF 360 AAAMNFMPGS PSSLMSPSAF TPSMSPSAAN GISHSSLAWP QPNVPSLRLP GSNLQSSRLR 420 SSLNARDIAA EEFDNMLQDY DLQQQQQLLS EFSCLSMTPN SLNRSNRSKT LNPSNLDDLF 480 SAESLSPRYN DQGLGSCLYS PTHKSAVFNQ FQQQQQSMLS PINTNFSPKG VADHPLLSGR 540 MSPRSVEPIS PMSARASMLA QREQQLHQFR SLSSRDLGTS LGAIVGSPVH SWSRWGSSNG 600 KPDWGTNTEE LGKLRRSSSF ELGNNGEEPD LSWVQSLVKE SPTDIKEKVG GSVSSVVDSS 660 YSNAQAEVVD MAERY*

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MNNLTVETLD TFSSLLEVSA NNDVEAFKRL IEDDPAGIDE PGLWYVRKKG SKQMVYEHRT  60
PLMVASIYGS MDVLKLIISL SVTDVNRSCG EDKSTALHCA ASGGSVNAVD VVRLLLEAGA  120
DHNALDANGN RPFDVIMVSP RQNDVKSALE ELLAGHGSIS ERILRLPSAT SNSNSPPLSS  180
SPVNGSPSSY SDSPPSPINS KFDDIQATSY AAEKKEYPID PSIPDIKNSI YATDEFRMYS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGP SCARRVCFFA HIPEELRPLY VSTGSAVPSP RSSASSSMDF  360
AAAMNFMPGS PSSLMSPSAF TPSMSPSAAN GISHSSLAWP QPNVPSLRLP GSNLQSSRLR  420
SSLNARDIAA EEFDNMLQDY DLQQQQQLLS EFSCLSMTPN SLNRSNRSKT LNPSNLDDLF  480
SAESLSPRYN DQGLGSCLYS PTHKSAVFNQ FQQQQQSMLS PINTNFSPKG VADHPLLSGR  540
MSPRSVEPIS PMSARASMLA QREQQLHQFR SLSSRDLGTS LGAIVGSPVH SWSRWGSSNG  600
KPDWGTNTEE LGKLRRSSSF ELGNNGEEPD LSWVQSLVKE SPTDIKEKVG GSVSSVVDSS  660
YSNAQAEVVD MAERY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein