PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62023665-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20754.7 Da PI: 9.7925 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.4 | 3.3e-17 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ien + r+ t skR +g+ KK +ELSvLCd++++ iif+++ + AUR62023665-RA 10 FIENATSRKATSSKRTKGLVKKTQELSVLCDIDACAIIFAKDAQ 53 8***************************************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MARKKVKLAF IENATSRKAT SSKRTKGLVK KTQELSVLCD IDACAIIFAK DAQVPVVWPS 60 SEAEIKRIIS NYRDNSDMYQ LQRQLDQQSL SEVNVIKTEE KVERIQRKNR DLQIENMVTD 120 IMTGKSTIEQ VDPCDLSDLI LVLENRMKSV QHRLKVFGKN SNPRSQGDRT MEASTSGANH 180 TSQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 6e-25 | M-type_MADS family protein |