PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62023664-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23129.4 Da PI: 9.9111 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.4 | 9.2e-14 | 11 | 54 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 i++ + r+ + R g+lKK +E+SvLCd++++ ii+++++++ AUR62023664-RA 11 IKDVTSRKASHKTRSLGLLKKTQEISVLCDVDACAIIYGEDDQV 54 899999**********************************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MSRKNVKSSI IKDVTSRKAS HKTRSLGLLK KTQEISVLCD VDACAIIYGE DDQVPLAWPS 60 SEAEVRRIIN NYKGKSQVGQ LERQLDQQTF LKQTVQKSEE KLARIQVKNR ELQMENIITD 120 IMAGRSTLEQ VPFCDLGYMI RMLKERMKLV KNRISNWGNN INSNPPFQNS SASRDDNLKI 180 NSSLFHGDGM MEAITSRNNH TSE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-24 | M-type_MADS family protein |