PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023066-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 692aa MW: 75759.7 Da PI: 6.5028

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023066-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.6e-08	264	284	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg AUR62023066-RA 264 PCPEFRK-GTCRRGDLCEYAHG 284 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MCGCPDRTNT TVDSEQSPPQ HNSNTTMKEP NHVFAESENC FSNILELAAN DDVQGFNKIL 60 EHDASVICQA DLWYGRQMGS RQMVLEHRTP LMVAATYGSL DVLKLILAEP GVDVNFSDIP 120 DKSTALHCAA SEYLLANNDP HRSIIGPKLR VSVRSSGTSS PPLSSSPGND SSSCPSDSML 180 SPKILKLSDH SINQPPEKKE YPIDPSLPDI KNSIYATDEF RMFSFKVRHC SRAYSHDWTE 240 CPFVHPGENA RRRDPRSYNY SCVPCPEFRK GTCRRGDLCE YAHGVFECWL HPAQYRTRLC 300 KDGTSCNRRV CFFAHLPEEL RPLYVSTGSA APSPRASASA ATVMDMAAAM NLFPGSPSAI 360 SAMSPSPFSP QCMSPPTNAC SNSPLPPQQN FPTLHLPGSN LQSSRLRSSL SARDIPPEDY 420 NMLLDFDAQQ HLLDDHMASF SQQRAKPSSM MRGVRTKTLA PSNLEEAFYS EIASSPRYSD 480 QAAAAVFSPT HKSVLLNQFQ HQQSFLAPIN TSNIYSPKSV EHPLLQASFN VSSPGRMSPR 540 SVEPISPMSA RLSALALRXX XXXXXXSFSS REFGIKHTSS LVGSPVNSWS NWGSPNGKVD 600 WSVNGGGDDM GQLRRSSSFE LGNNGEEPDL SWVQSLVKES PPETEEKHGA PVSGATSSGE 660 GLANKASKDP TDYSVVGAWL EHMQLDQIVT Q*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MCGCPDRTNT TVDSEQSPPQ HNSNTTMKEP NHVFAESENC FSNILELAAN DDVQGFNKIL  60
EHDASVICQA DLWYGRQMGS RQMVLEHRTP LMVAATYGSL DVLKLILAEP GVDVNFSDIP  120
DKSTALHCAA SEYLLANNDP HRSIIGPKLR VSVRSSGTSS PPLSSSPGND SSSCPSDSML  180
SPKILKLSDH SINQPPEKKE YPIDPSLPDI KNSIYATDEF RMFSFKVRHC SRAYSHDWTE  240
CPFVHPGENA RRRDPRSYNY SCVPCPEFRK GTCRRGDLCE YAHGVFECWL HPAQYRTRLC  300
KDGTSCNRRV CFFAHLPEEL RPLYVSTGSA APSPRASASA ATVMDMAAAM NLFPGSPSAI  360
SAMSPSPFSP QCMSPPTNAC SNSPLPPQQN FPTLHLPGSN LQSSRLRSSL SARDIPPEDY  420
NMLLDFDAQQ HLLDDHMASF SQQRAKPSSM MRGVRTKTLA PSNLEEAFYS EIASSPRYSD  480
QAAAAVFSPT HKSVLLNQFQ HQQSFLAPIN TSNIYSPKSV EHPLLQASFN VSSPGRMSPR  540
SVEPISPMSA RLSALALRXX XXXXXXSFSS REFGIKHTSS LVGSPVNSWS NWGSPNGKVD  600
WSVNGGGDDM GQLRRSSSFE LGNNGEEPDL SWVQSLVKES PPETEEKHGA PVSGATSSGE  660
GLANKASKDP TDYSVVGAWL EHMQLDQIVT Q*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-149	C3H family protein