PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62021755-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 27562.2 Da PI: 6.7282 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.4 | 3.6e-36 | 10 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+ Cvlapyfpa+q+k f nvhklFG+ +++kll+ lp++++ +am+s++ +A++r r Pv+G++gvi++l +q+ q +ael AUR62021755-RA 10 ACAACKYQRRKCAPTCVLAPYFPADQHKMFLNVHKLFGVMKIQKLLHVLPPSTHGEAMASIIHHADIRDRYPVHGCLGVIHALLNQIWQCQAELF 104 7********************************************************************************************97 PP DUF260 96 llk 98 ++ AUR62021755-RA 105 DVQ 107 776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MTLKGGTNQA CAACKYQRRK CAPTCVLAPY FPADQHKMFL NVHKLFGVMK IQKLLHVLPP 60 STHGEAMASI IHHADIRDRY PVHGCLGVIH ALLNQIWQCQ AELFDVQSML KVFRQQHEQQ 120 QQVPSDGVPK EDFNGASQLQ MEMANMVPVS QSHSYSSSSS PCNPTYLDVK VTSVNSLWNQ 180 QGEGNDSNNS ENEKIMPAQS KMVVTPEPLA VQKESFQNYD MHPYFDTIDD RQSYVDTKDA 240 YESR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-41 | LBD family protein |