PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019477-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NAC

Protein Properties

Length: 401aa MW: 43591.9 Da PI: 7.4924

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019477-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.5	4.3e-56	16	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv + +++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ AUR62019477-RA 16 LPPGFRFHPTDEELISYYLLKKVLDGNFSG-RAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSS 109 79***********************999.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek++Wvmheyrle AUR62019477-RA 110 kTSALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 144 56778**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MDQPFFLHFD NSESNLPPGF RFHPTDEELI SYYLLKKVLD GNFSGRAIAE VDLNKCEPWE 60 LPEKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT GKDREIYSSK TSALVGMKKT 120 LVFYRGRAPK GEKSNWVMHE YRLEGKFSYH YLSRSSKDEW VISRVFQKIG NGIGTTSTGT 180 TNTGGGKKTR GSGIMSGLYN YNSTINDVCS SPSSASISIS QQLPPLLDSS PYGGAMNEAC 240 SYNDGSESNN TNNNPIKKEH VSCFSSNTNS ININTSTNNI SNFNPFELTF APPPPMMSTP 300 PPXXXXXXXS FTLSGVGLPV FPSLRSLQDN LHLPWVGGGT PIQSGSTTGG CELDVMMGGT 360 NATTWGGGNG GGGVGFDHYI GGGRVGIGGG GSELDCMWSY *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MDQPFFLHFD NSESNLPPGF RFHPTDEELI SYYLLKKVLD GNFSGRAIAE VDLNKCEPWE  60
LPEKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT GKDREIYSSK TSALVGMKKT  120
LVFYRGRAPK GEKSNWVMHE YRLEGKFSYH YLSRSSKDEW VISRVFQKIG NGIGTTSTGT  180
TNTGGGKKTR GSGIMSGLYN YNSTINDVCS SPSSASISIS QQLPPLLDSS PYGGAMNEAC  240
SYNDGSESNN TNNNPIKKEH VSCFSSNTNS ININTSTNNI SNFNPFELTF APPPPMMSTP  300
PPXXXXXXXS FTLSGVGLPV FPSLRSLQDN LHLPWVGGGT PIQSGSTTGG CELDVMMGGT  360
NATTWGGGNG GGGVGFDHYI GGGRVGIGGG GSELDCMWSY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	381	390	GGGRVGIGGG
2	382	391	GGGRVGIGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	1e-102	NAC family protein