PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62018937-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 266aa    MW: 29881.9 Da    PI: 9.7429
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62018937-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-06117136120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  nL+ H+
  AUR62018937-RA 117 FSCHLCSKTFNRYNNLQMHM 136
                     89*****************9 PP
2zf-C2H212.20.00056201223123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgks   k + ++H +++
  AUR62018937-RA 201 FSCRKCGKSLAVKGDWRTHEKNC 223
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MKPIAITTFS CTSSLGSFSN KDDDKRIEPL NLFPDKAEGF SSVKDFNNAK KLNNKEGEDD  60
NNNGVTVALH IGLPNHDNLV RKGNGNDVGD NNNNHLLMSN NYWIPSAAQI LVGFTHFSCH  120
LCSKTFNRYN NLQMHMWGHG SQYRKGPDSL KGVQPRAILS VPCYCCEEGC KNNINHPKSK  180
PLKDFRTLQT HYKRKHGHKP FSCRKCGKSL AVKGDWRTHE KNCGKRWLCL CGSDFKHKRS  240
LKDHIRAFGS GHAPFPPSFD TVQLL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-103C2H2 family protein