PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017914-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1044aa MW: 115952 Da PI: 8.0962

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017914-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	157	176	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f+ G C++G++C+F H AUR62017914-RA 157 ICRDFSS-GRCRRGSSCHFLH 176 7****.*********** PP
2	zf-CCCH	20.1	1.1e-06	224	244	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C++ H+ AUR62017914-RA 224 ICNEFLK-GRCRRGDLCRYVHD 244 6****.***********7 PP
3	zf-CCCH	23.1	1.3e-07	309	330	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C+ffa+ G C+ G rCkF+H AUR62017914-RA 309 ETPCKFFAA-GNCRNGTRCKFSH 330 6799999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence
MKRNGAREGT QKCVLVWPVG RYADRFVKYA YSSSHLSNQD PAILSGEMSG SSKRRHSKWD 60 HKDAEALPEN FYDRAQTRRP REPLSPDRSS RRHDSRSKES AMTWDREGNC TRISPGLDEW 120 RPRHSSRSPR NGWGRSHRRE PAVNDRSRSR SGVPAQICRD FSSGRCRRGS SCHFLHQDEM 180 YDNRRLECSS PEDWESRRRK TGGSRYSPDD TKDSATRTEK SAHICNEFLK GRCRRGDLCR 240 YVHDDSAADV FDKGVVEDVY RNRDHDLRSR DIYPDHDHRS RDTYCDLDHR RRDTYPDRNH 300 EFEPPKRGET PCKFFAAGNC RNGTRCKFSH QVQEIYSPDR RSRGDRRGPD HKSEGGQVWE 360 GSRWSDATAV STVPAVQGWG EDKNERKEVS TARYKGDGRG LDHKYEGDRG WDGPSWCDVT 420 TVPNNPAAHG WGDDKNEITE VAKDMTGSRP GDDCWSHDML DIKQTRETSA NIGKSLIQDK 480 KQALQWKIEN NVPGLTENFS GDMEISPRDI KQQGMNSSSS QTASNISFPA VQQDVAGEAS 540 YEKHYQAGLQ EQKVFHDPFA DQNPDYKDKK PMLNSGGRSD VRDHDGSCIV QNQPLNLLQG 600 QGNFQSDHSV NVHPTTNINS PLGQTQLSLP SHSLPGQSQP SIPSHPPGKN QLSIPLQSPL 660 GQSQFSLFSH SPPGQNQLSL SSHPPPGQNQ LPLPGPPPPG QNQLPLPGPP PPGQNQLPLP 720 GPPPPGQIQL PFPGLPSSGK NQLSLPLQNA GQGQLSSPSY LSQGEAMQRQ VSHNPSAFLD 780 KKVDGSHAVS LASSEVAPES ATAHSSVSNK QLAQLSHLTA SLTQLLESRQ QHSQFSTAVT 840 PCSLSNSPDI AEPVPPVSAA TIQLNQAPEA LKPYDPVCNS VEPKMANLGN HVLPSVEQNI 900 SKNEIHHKDN VTQQEPVAAS KDEKYGKTTD EGIIKALENG PSQDMGADDG ADDDKKLKDT 960 KGLRQFKFAL AEFVKELLKP SWKDGHVSKD AYKTIVKKVV DKVTETLGPQ IPQTKEKIDM 1020 YLSCSKQKID KLVQAYVGKH QKS*

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence

MKRNGAREGT QKCVLVWPVG RYADRFVKYA YSSSHLSNQD PAILSGEMSG SSKRRHSKWD  60
HKDAEALPEN FYDRAQTRRP REPLSPDRSS RRHDSRSKES AMTWDREGNC TRISPGLDEW  120
RPRHSSRSPR NGWGRSHRRE PAVNDRSRSR SGVPAQICRD FSSGRCRRGS SCHFLHQDEM  180
YDNRRLECSS PEDWESRRRK TGGSRYSPDD TKDSATRTEK SAHICNEFLK GRCRRGDLCR  240
YVHDDSAADV FDKGVVEDVY RNRDHDLRSR DIYPDHDHRS RDTYCDLDHR RRDTYPDRNH  300
EFEPPKRGET PCKFFAAGNC RNGTRCKFSH QVQEIYSPDR RSRGDRRGPD HKSEGGQVWE  360
GSRWSDATAV STVPAVQGWG EDKNERKEVS TARYKGDGRG LDHKYEGDRG WDGPSWCDVT  420
TVPNNPAAHG WGDDKNEITE VAKDMTGSRP GDDCWSHDML DIKQTRETSA NIGKSLIQDK  480
KQALQWKIEN NVPGLTENFS GDMEISPRDI KQQGMNSSSS QTASNISFPA VQQDVAGEAS  540
YEKHYQAGLQ EQKVFHDPFA DQNPDYKDKK PMLNSGGRSD VRDHDGSCIV QNQPLNLLQG  600
QGNFQSDHSV NVHPTTNINS PLGQTQLSLP SHSLPGQSQP SIPSHPPGKN QLSIPLQSPL  660
GQSQFSLFSH SPPGQNQLSL SSHPPPGQNQ LPLPGPPPPG QNQLPLPGPP PPGQNQLPLP  720
GPPPPGQIQL PFPGLPSSGK NQLSLPLQNA GQGQLSSPSY LSQGEAMQRQ VSHNPSAFLD  780
KKVDGSHAVS LASSEVAPES ATAHSSVSNK QLAQLSHLTA SLTQLLESRQ QHSQFSTAVT  840
PCSLSNSPDI AEPVPPVSAA TIQLNQAPEA LKPYDPVCNS VEPKMANLGN HVLPSVEQNI  900
SKNEIHHKDN VTQQEPVAAS KDEKYGKTTD EGIIKALENG PSQDMGADDG ADDDKKLKDT  960
KGLRQFKFAL AEFVKELLKP SWKDGHVSKD AYKTIVKKVV DKVTETLGPQ IPQTKEKIDM  1020
YLSCSKQKID KLVQAYVGKH QKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	201	SRRRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-09	C3H family protein