PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014909-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

WOX

Protein Properties

Length: 345aa MW: 37177.4 Da PI: 7.2426

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014909-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7e-18	52	112	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ AUR62014909-RA 52 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 112 89***************99***********************************995 PP
2	Wus_type_Homeobox	113.2	1.4e-36	51	114	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq AUR62014909-RA 51 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 114 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MFKSKPCNNQ PWSQQHDSNH HQSSLLSNSC GRSSSSNSPF SSGCEERSPE PKPRWNPKPE 60 QIRILEAIFN SGMVNPPRDE IRRIRAQLQE YGQVGDANVF YWFQNRKSRS KHKQRTLQAK 120 TTAATAAAAT NNNVITNPLF FPLHQSGGGN SFSQGLCFGP THHHDDASAT INVPASSDQA 180 VGGFSSLLLG DMFGGVHSKR DHEVEKLKFQ QELSFLVTNP PNTSTCAVTS SSPVVPTAIS 240 GSLGQLLGVG ESAGLSGKST VFINGMEFEL PVGPFNVKEE FGEDAVLVHS GSGHPVMTNE 300 WGVTVHPLQH GASYYLVGSV TASPLLHKLD STPDLLAPGF PYQI*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MFKSKPCNNQ PWSQQHDSNH HQSSLLSNSC GRSSSSNSPF SSGCEERSPE PKPRWNPKPE  60
QIRILEAIFN SGMVNPPRDE IRRIRAQLQE YGQVGDANVF YWFQNRKSRS KHKQRTLQAK  120
TTAATAAAAT NNNVITNPLF FPLHQSGGGN SFSQGLCFGP THHHDDASAT INVPASSDQA  180
VGGFSSLLLG DMFGGVHSKR DHEVEKLKFQ QELSFLVTNP PNTSTCAVTS SSPVVPTAIS  240
GSLGQLLGVG ESAGLSGKST VFINGMEFEL PVGPFNVKEE FGEDAVLVHS GSGHPVMTNE  300
WGVTVHPLQH GASYYLVGSV TASPLLHKLD STPDLLAPGF PYQI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	6e-55	WOX family protein