PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62014658-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14517.1 Da    PI: 10.5331
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62014658-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65e-161050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR+ g+lKK  EL +LCd++++ i++s+
  AUR62014658-RA 10 FIANDSARKATYKKRKRGLLKKMDELTTLCDVKACAILYSP 50
                    899************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    
MTRKKVKLAF IANDSARKAT YKKRKRGLLK KMDELTTLCD VKACAILYSP YETRPVVWPA  60
PSGAKDVIAS FKRLPEMEKV KKMVSQEEFL RQRVAKAHEQ LKKQQKDNRE KDMTHVMYQC  120
LAGQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFIANDSARKATYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-50M-type_MADS family protein