PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013690-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 498aa MW: 54755.5 Da PI: 6.6694

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013690-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F+++ L H +H AUR62013690-RA 208 FECKACGRTFTSHQALGGHRASH 230 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MCGRALGGHM RAHGIGDESG VLDDDDPASD WEDKGGSGGV NTPPSNKRMY ALRTNPNRLR 60 STRVCENCGK EFLSWNTFIE HHGKCNPNDV ESPLSSPESD GDDVGGRRAS GWSKRKRSFR 120 TKVENYTPNC PSSEEEDLAN CLMMLSNAAV DPMVVEQLDE SSASASKEEE RRHSSSFMAP 180 YMTSRGPLPF DVKAKGVASN NTNPKGLFEC KACGRTFTSH QALGGHRASH KKVKGCFAAK 240 MDQVDQDYSY NGEEDTLGGG SDHEFMRPAK SCTTYQFERG GSSSPLTNMS KRPKSKSHEC 300 SICHRVFSSG QALGGHKRCH WITSNAPDTS TLTRFQELQI EQVHERPPPP IFTTHHHQLS 360 ISEQKALDLN LPAPNDQDIL KIQRDPRNSL SFRVPTNILL QSWGSANVEI KQESNVHHQD 420 KGLNYENEVE NESDHKKITN NISVIESNMP NNADDEADSK VKLAKLCEQD NMSTNNGSSS 480 PWLQVGIGPS NAVKASP*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MCGRALGGHM RAHGIGDESG VLDDDDPASD WEDKGGSGGV NTPPSNKRMY ALRTNPNRLR  60
STRVCENCGK EFLSWNTFIE HHGKCNPNDV ESPLSSPESD GDDVGGRRAS GWSKRKRSFR  120
TKVENYTPNC PSSEEEDLAN CLMMLSNAAV DPMVVEQLDE SSASASKEEE RRHSSSFMAP  180
YMTSRGPLPF DVKAKGVASN NTNPKGLFEC KACGRTFTSH QALGGHRASH KKVKGCFAAK  240
MDQVDQDYSY NGEEDTLGGG SDHEFMRPAK SCTTYQFERG GSSSPLTNMS KRPKSKSHEC  300
SICHRVFSSG QALGGHKRCH WITSNAPDTS TLTRFQELQI EQVHERPPPP IFTTHHHQLS  360
ISEQKALDLN LPAPNDQDIL KIQRDPRNSL SFRVPTNILL QSWGSANVEI KQESNVHHQD  420
KGLNYENEVE NESDHKKITN NISVIESNMP NNADDEADSK VKLAKLCEQD NMSTNNGSSS  480
PWLQVGIGPS NAVKASP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	1e-23	C2H2 family protein