PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62013161-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20463.6 Da PI: 7.0314 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.7 | 1.3e-22 | 2 | 48 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +r e +snrqvtfskRr g++KKA+EL++LC++e+a+i+fs+ k + AUR62013161-RA 2 ERMEKDSNRQVTFSKRRCGLFKKASELCTLCGVEAAIIVFSPGKKAF 48 57899************************************987755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MERMEKDSNR QVTFSKRRCG LFKKASELCT LCGVEAAIIV FSPGKKAFSF GHPSVEMVAN 60 RYYFSKYSPS SSSSDQDIKP PLGVGVGIHR SSAGVCDLNL ELTLINRQME MEKKRNEEMT 120 ETMMDLPIEL LSLENLERFK ASLEELKKHV IQQGLLLALH GSISFAEELK ENHTLNFIFN 180 V* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-37 | M-type_MADS family protein |