PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013160-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 336aa    MW: 36429.5 Da    PI: 7.8986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013160-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.8e-232067249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    r e  +nr vtfskRr g++KKA+EL++LCda+vavi+fs+  k++ +
  AUR62013160-RA 20 RMEKATNRLVTFSKRRSGLFKKASELCTLCDAQVAVIVFSPGKKVFSF 67
                    56889************************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAENMIERKT RGRQKVPMVR MEKATNRLVT FSKRRSGLFK KASELCTLCD AQVAVIVFSP  60
GKKVFSFGHP SVDAVINRYL MVNTNLNNAN NNAGSLGSCI DTSLLNLQIT NNNNHADSER  120
KRGEGILKER EGREEDFLWI SPIDANCFED LKKIEKSIAK VMNDAYAKHH HCLLRAKQAR  180
AIMGLACTSP PEMVEGQNPI ATPYGGENNP MEGGQFDGHP PLPPYPLEGN QFGGHPPLPS  240
INPMEGGQFG GHPPLPSMNP MIGGQFGGHP PLPPMNPMNG GQFGGHPPLP PNMADMDPMP  300
SNIQTFTPSQ FGVGSGANVP VNYPSGFGFG YDKFH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-33M-type_MADS family protein