PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62012889-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24474.2 Da PI: 9.6533 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.4 | 6.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g++KKA+ELS+LCdae+a+i+fss++klye+s+ AUR62012889-RA 9 KKIENIAARQVTFSKRRKGLIKKAQELSTLCDAEIALIVFSSSDKLYEFST 59 68***********************************************96 PP | |||||||
2 | K-box | 59.1 | 1.8e-20 | 92 | 171 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a + ke+e ++e+R+l+GedLe L ++eL +Le+q+ek+ + +R K++ ll+++ +l++ke++l e+nk+L++k++ AUR62012889-RA 92 DCAVVSKEVEDKRQELRRLKGEDLEGLGFEELVKLERQIEKAFTCVRRMKDDKLLRMVTDLKRKENKLIENNKDLNQKIK 171 5666788999999*****************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MVRSRIQIKK IENIAARQVT FSKRRKGLIK KAQELSTLCD AEIALIVFSS SDKLYEFSTS 60 RVTRVIQRYM RHTEKLPDDE QLDPYPVFLE DDCAVVSKEV EDKRQELRRL KGEDLEGLGF 120 EELVKLERQI EKAFTCVRRM KDDKLLRMVT DLKRKENKLI ENNKDLNQKI KNAIEGKSHA 180 SGQQLALFPE HNHIPNNSVS FDTNLRLGFI * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-39 | MIKC_MADS family protein |