PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012312-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ERF

Protein Properties

Length: 387aa MW: 43045.2 Da PI: 4.6497

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012312-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.2	5.4e-20	87	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a++ ++g AUR62012312-RA 87 CKYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTALEAALAYDEAARMMYG 137 79***999.******8...3.35********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGTFDFDKAT SNTHCSSSVP FDYTRRRKAR RRRDGTDSVS ETLARWKEIN DKLYEDKNDG 60 KPVRKAPAKG SKKGCMKGKG GPENSLCKYR GVRQRTWGKW VAEIREPNRG KRLWLGTFPT 120 ALEAALAYDE AARMMYGQSA RLNLPHYPAS LMEDFRDNSA TTTTTATTNT ASYTMSSDNH 180 SDVCFGDQWD SNMDGAGVKQ EDAESDSQFD VKNAAMMLNV GTPASTVKTE AKADSEGGID 240 INDYLQNLTM DEMFDVDELL GAIDAGPVSP ADYVTNQGHA TNQDYMTNQG YTMNQGYDAF 300 RSQVENNSIQ LEKPESWSNQ SQNPDILYQF QNQADAKLLG SLNYNDQVNN GTDYGFDFLK 360 PGRQEDSSLV VDDHGFLNLA ELGFNY*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGTFDFDKAT SNTHCSSSVP FDYTRRRKAR RRRDGTDSVS ETLARWKEIN DKLYEDKNDG  60
KPVRKAPAKG SKKGCMKGKG GPENSLCKYR GVRQRTWGKW VAEIREPNRG KRLWLGTFPT  120
ALEAALAYDE AARMMYGQSA RLNLPHYPAS LMEDFRDNSA TTTTTATTNT ASYTMSSDNH  180
SDVCFGDQWD SNMDGAGVKQ EDAESDSQFD VKNAAMMLNV GTPASTVKTE AKADSEGGID  240
INDYLQNLTM DEMFDVDELL GAIDAGPVSP ADYVTNQGHA TNQDYMTNQG YTMNQGYDAF  300
RSQVENNSIQ LEKPESWSNQ SQNPDILYQF QNQADAKLLG SLNYNDQVNN GTDYGFDFLK  360
PGRQEDSSLV VDDHGFLNLA ELGFNY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	34	RRRKARRRRD
2	27	36	RRRKARRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40350.1	1e-31	ERF family protein