PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62011898-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21132.2 Da PI: 8.2892 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll +lp ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l AUR62011898-RA 8 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHLPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQL 102 7*************************99******************************************************************* PP DUF260 95 allkeel 101 +++k++l AUR62011898-RA 103 VQVKAQL 109 **99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MAAGAGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHLPVH 60 DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLVQVKAQLA NNLVDNRNSM 120 ENQWTTAATT AIEGNNNSID QQNVSRDHQG MMIMAMQDYG GAISAKSEGI IGKKRSHNDM 180 GELQELALRM MRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 177 | KKRSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-59 | LBD family protein |