PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62009724-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 120aa MW: 13081.1 Da PI: 7.8681 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.1 | 6.4e-43 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p+++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+ AUR62009724-RA 19 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPDNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQTLQAELN 113 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e AUR62009724-RA 114 AVRAE 118 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence |
MMGVGPPPHL GTTLNTITPC AACKLLRRRC AEECPFSPYF SPHEPQKFAA VHKVFGASNV 60 SKLLMEVPDN QRADAANSLV YEANVRLRDP VYGCMGAISA LQQQVQTLQA ELNAVRAEIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 7e-69 | LBD family protein |