PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009557-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 688aa MW: 75802.1 Da PI: 7.6514

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009557-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	587	636	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ AUR62009557-RA 587 RRPFSVTEVESLVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 636 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MLQKRLDYGF SGYQVPFIPR AARSSRKRRP IREKVVAVDN QLCAFDLLAT VAGKLLEGES 60 SQNLPIEKDQ LGDIQDVVMQ EQDEGTLCLK DEHCTKGGNE VASLNLELGL QVHDQGCDVK 120 ENSGPQNDSS PAPVSVITSS HCTEKDEFLV KMDTNDDKSD FCSLSRNTEG FAPGHTDSCA 180 PNVNESVEEH DGKGEVLSGN GLDMHCSEDP EFFDGISPAV ASSDCSIKLS LGVDHYPCGS 240 LSPRRDNNVK VVTRDDDENS SECTQPSTMK AARLPARIGD RRIRKLLASK HWRLASKVKD 300 GDHSDTGLRC IYRSRRTGYK RPRSQRIYPF KKRKFYHYSS LLNSDVDDGC KGVYDVLDRA 360 IDQTVCSFSA VRNRVVASGN GSSSCVAGQS TSFASRESHV KLRIKSFRVP ELFIEMPETA 420 TVGSLKRTVM EAVTALLGGG LRVGVRLQGK KIRDDNRTLV QSGICHDDKV ESLGFTLEPN 480 PSHISTPVSS EDNSLLLSTD LPQPVSRCPT LSANNQGASH HHPVTNLGNF VESDHDSAPS 540 PAEITAEKGS VDSRALVALP EGTPQALAVV PSHQKSKRSE MAQRRIRRPF SVTEVESLVQ 600 AVEKLGTGRW RDVKLRAFDN VKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV 660 LAAHSYWSQQ QAKQQLKQQP SDACLLL*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MLQKRLDYGF SGYQVPFIPR AARSSRKRRP IREKVVAVDN QLCAFDLLAT VAGKLLEGES  60
SQNLPIEKDQ LGDIQDVVMQ EQDEGTLCLK DEHCTKGGNE VASLNLELGL QVHDQGCDVK  120
ENSGPQNDSS PAPVSVITSS HCTEKDEFLV KMDTNDDKSD FCSLSRNTEG FAPGHTDSCA  180
PNVNESVEEH DGKGEVLSGN GLDMHCSEDP EFFDGISPAV ASSDCSIKLS LGVDHYPCGS  240
LSPRRDNNVK VVTRDDDENS SECTQPSTMK AARLPARIGD RRIRKLLASK HWRLASKVKD  300
GDHSDTGLRC IYRSRRTGYK RPRSQRIYPF KKRKFYHYSS LLNSDVDDGC KGVYDVLDRA  360
IDQTVCSFSA VRNRVVASGN GSSSCVAGQS TSFASRESHV KLRIKSFRVP ELFIEMPETA  420
TVGSLKRTVM EAVTALLGGG LRVGVRLQGK KIRDDNRTLV QSGICHDDKV ESLGFTLEPN  480
PSHISTPVSS EDNSLLLSTD LPQPVSRCPT LSANNQGASH HHPVTNLGNF VESDHDSAPS  540
PAEITAEKGS VDSRALVALP EGTPQALAVV PSHQKSKRSE MAQRRIRRPF SVTEVESLVQ  600
AVEKLGTGRW RDVKLRAFDN VKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  660
LAAHSYWSQQ QAKQQLKQQP SDACLLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	286	DRRIRKL
2	325	334	QRIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-113	MYB_related family protein