PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008894-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 719aa MW: 79116.6 Da PI: 4.7286

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008894-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.1	8.9e-20	576	673	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv++ngL+egDf+v++ ++ +++ AUR62008894-RA 576 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGIPIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDvKCG 667 79***********************999999999*7778***99777777777777.******************..566999 PP ..EEEE CS B3 91 elvvkv 96 +++++ AUR62008894-RA 668 KYMIRG 673 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MGLKKELVMH GEDLQNFDVV AGEGIKDSEE EIWFETASHP FESNNNDENK DANMSNENDF 60 LDVDVSDPSS LFYADFPPLP EFPCMXXXXX XXXTPVATVA PKPLGVCSTA TTSSSASTAS 120 SGAASWAVLK SDADQDPEPV TDHDLVQRVE EREILMDDVD HCMDMMQNFG CIDMLENTDI 180 CWDPSPLFED NNGDENECSQ YQFLQPEEVL VNRQIVDEDE EERVFEHGVV SGGMGGQNSG 240 EPGSSTDDLA LVFFEWLKSN KEAISAEDLR NIKIKKSTIE NAAKRLGGGK EGMKQLLKLI 300 LQWVQNHHLQ NKKMMMSGED NEFHAVNTDH KNENATTSDT SAANPSCAPE SQCFRLTTWL 360 PAPPPPQSYV SESPVMVPMT APPPPPGFPP TIGYMGGDPY GGGNPTAAYP PMPPSDYHTW 420 GPTPMQYGMS PHYGGYPDAA APFGGYPNPP PYPGFYYHPG PTEGLVRLGS SATKEARKKR 480 MARQRSQMAE QQHAAAVVGN GNCGVVAPHG NWVYWPPPPP PQVVAPQQVN HPGPMVGQMM 540 PPQPPIERAA NGYQKQVGIE KKQGWKTEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH 600 LPELEARDGI PIAMEDIGTS RVWNMRYRFW PNNKSRMYLL ENTGDFVRSN GLQEGDFIVI 660 YSDVKCGKYM IRGVKVRPQQ QSAKPELTNK KSNKTQKTEP TSSPAGNGPS SSPTVTQS*

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MGLKKELVMH GEDLQNFDVV AGEGIKDSEE EIWFETASHP FESNNNDENK DANMSNENDF  60
LDVDVSDPSS LFYADFPPLP EFPCMXXXXX XXXTPVATVA PKPLGVCSTA TTSSSASTAS  120
SGAASWAVLK SDADQDPEPV TDHDLVQRVE EREILMDDVD HCMDMMQNFG CIDMLENTDI  180
CWDPSPLFED NNGDENECSQ YQFLQPEEVL VNRQIVDEDE EERVFEHGVV SGGMGGQNSG  240
EPGSSTDDLA LVFFEWLKSN KEAISAEDLR NIKIKKSTIE NAAKRLGGGK EGMKQLLKLI  300
LQWVQNHHLQ NKKMMMSGED NEFHAVNTDH KNENATTSDT SAANPSCAPE SQCFRLTTWL  360
PAPPPPQSYV SESPVMVPMT APPPPPGFPP TIGYMGGDPY GGGNPTAAYP PMPPSDYHTW  420
GPTPMQYGMS PHYGGYPDAA APFGGYPNPP PYPGFYYHPG PTEGLVRLGS SATKEARKKR  480
MARQRSQMAE QQHAAAVVGN GNCGVVAPHG NWVYWPPPPP PQVVAPQQVN HPGPMVGQMM  540
PPQPPIERAA NGYQKQVGIE KKQGWKTEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH  600
LPELEARDGI PIAMEDIGTS RVWNMRYRFW PNNKSRMYLL ENTGDFVRSN GLQEGDFIVI  660
YSDVKCGKYM IRGVKVRPQQ QSAKPELTNK KSNKTQKTEP TSSPAGNGPS SSPTVTQS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-129	B3 family protein