PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007346-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 795aa    MW: 88514.9 Da    PI: 6.2674
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007346-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-204499156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  AUR62007346-RA 44 KKRYHRHTARQIQEMEALFRECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMK 99
                    688899***********************************************998 PP
2START146.13.2e-462614942206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdet 75 
                     la + ++el+k+  ++ep+W++ s    e +n +e+ +                         ++ea r++++ +m++ +lv ++ld + +W e 
  AUR62007346-RA 261 LAMSSMDELLKMCHVNEPLWFRNSsnsiEVLNMEEYSR------MfpwprhhadplkqhyneLRTEATRDKALIIMNSINLVDSFLDAN-KWMEL 348
                     677899******************55554444444444......344555589************************************.***** PP

                     -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEE CS
           START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgiliep 156
                     ++    +a+t++ +++g      gal+lm+aelq+lsplvp R+ +f+Ry+    ++g w+ivd  vd+ q   +  + s+ R ++++Sg++i++
  AUR62007346-RA 349 FPsivsRAKTVQILTPGvsgqasGALYLMYAELQVLSPLVPtRETYFLRYCHHnAEEGMWAIVDFPVDNFQGSLQlsQNSIPRYRKRTSGCIIQD 443
                     *****************************************************99****************99889899999************* PP

                     ECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 157 ksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++ng+skv+wveh+++ +  p h  +   v+s +a+gak+w+a lqrqce+
  AUR62007346-RA 444 MPNGYSKVIWVEHAEVLEEKPiHRTFDLYVHSAMAFGAKRWLAILQRQCER 494
                     ***************9999999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MVESLSESEL NMEGQGGLSG NELDSLSEDP LNPNQSQPSQ SGKKKRYHRH TARQIQEMEA  60
LFRECPHPDD KQRMKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRTDNVIL RAENDNLKNE  120
NYRLQAVLRS LVCPGCGGGS ILGEVEYDEQ QLRLENARLK EEYDRVCAVA SRYTGRSLQS  180
LGPSPPPATL LPPPSLDLDM GMYSRHFQES MPPCTQMLPM PLLPEPTEFP GAXXXXXXXX  240
XXXXXRGGPI LDEERPLAME LAMSSMDELL KMCHVNEPLW FRNSSNSIEV LNMEEYSRMF  300
PWPRHHADPL KQHYNELRTE ATRDKALIIM NSINLVDSFL DANKWMELFP SIVSRAKTVQ  360
ILTPGVSGQA SGALYLMYAE LQVLSPLVPT RETYFLRYCH HNAEEGMWAI VDFPVDNFQG  420
SLQLSQNSIP RYRKRTSGCI IQDMPNGYSK VIWVEHAEVL EEKPIHRTFD LYVHSAMAFG  480
AKRWLAILQR QCERVASLMA RNVSDLGVIQ SPEARKNFMK LAQRMIRTLS VNISTSGGQS  540
WTALSESSDD TVRITTRKIM EPGQPNGLIL CAVSTTWLPY SHDRVFDLLK NEYRRSQLEA  600
LSNGSSSHEV AHIANGSHPG NCISLFRINV ASNSSQNVEL MLQESCTDPS GSLVVYATME  660
VDYIQLVMSG EDPSCIPLLP TGFSIIPLGR NNITPDAKNS TDGQSSSSNM DGGCLLTVGI  720
QVHASASPNA KLNLSSVNAI NNHICSVVHQ INASLSNTNG NSNAITNNAI TNDNINNVSN  780
TCVASTSNNN AVGS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein