PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007133-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ERF

Protein Properties

Length: 617aa MW: 67467 Da PI: 5.5802

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007133-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.5	1.9e-19	480	530	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g AUR62007133-RA 480 HYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 530 8******.*******9987..***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MGFDEYHPYV ESLSSHDSED SEGFHIGEED FSKDDSGLGE VEEEPGRPEL RLSPGRRLGL 60 GDDPYDEFTQ GRGLSPNLGN FNGGNPPLMR EEQQGGGERG VIERRSGGVL PIRPLANRGS 120 AGHTLCSLPS QTQPIFKGST FEMGESSATQ QRIRQGGGPG TMFHALGIFE WASTPSGLER 180 VNGFVQDDIV EGASEPPLTE FDPPNSPITH IGSFNFTELF NYDEKGCNKK RVREAVGHLS 240 HSCDGDSIRY SESDYDGFKG KELGGFTGGR RKGAFRFGLR IKEEIVNLLP RQFQIPIWLV 300 NLEWRLMETF AGGARTKDPP GNSSSSTESF KRQKSEEVTS VLREVRDHMD IDLQLPVMNL 360 MRRHLLEDWD PRIVGASTIN NGSNPVYRRN SSFSRLYPCL TENWGELPLK EDDSEDMVLF 420 GVLRDAVHTG WSPESGSDID SGSPAPVVVK SEPVESPVSV TGGEVPAVAV AMAAPTRGKH 480 YRGVRRRPWG KYAAEIRDPA KNGARVWLGT FETAEDAALA YDRAAFRMRG SKALLNFPLR 540 VNSGEPDPVR ITSKRSSPER TTSSLSTSSS SSSESGSPKR RKKENGQVGK GVEALQQVGC 600 QVGVNTLPLG DHLLVS*

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MGFDEYHPYV ESLSSHDSED SEGFHIGEED FSKDDSGLGE VEEEPGRPEL RLSPGRRLGL  60
GDDPYDEFTQ GRGLSPNLGN FNGGNPPLMR EEQQGGGERG VIERRSGGVL PIRPLANRGS  120
AGHTLCSLPS QTQPIFKGST FEMGESSATQ QRIRQGGGPG TMFHALGIFE WASTPSGLER  180
VNGFVQDDIV EGASEPPLTE FDPPNSPITH IGSFNFTELF NYDEKGCNKK RVREAVGHLS  240
HSCDGDSIRY SESDYDGFKG KELGGFTGGR RKGAFRFGLR IKEEIVNLLP RQFQIPIWLV  300
NLEWRLMETF AGGARTKDPP GNSSSSTESF KRQKSEEVTS VLREVRDHMD IDLQLPVMNL  360
MRRHLLEDWD PRIVGASTIN NGSNPVYRRN SSFSRLYPCL TENWGELPLK EDDSEDMVLF  420
GVLRDAVHTG WSPESGSDID SGSPAPVVVK SEPVESPVSV TGGEVPAVAV AMAAPTRGKH  480
YRGVRRRPWG KYAAEIRDPA KNGARVWLGT FETAEDAALA YDRAAFRMRG SKALLNFPLR  540
VNSGEPDPVR ITSKRSSPER TTSSLSTSSS SSSESGSPKR RKKENGQVGK GVEALQQVGC  600
QVGVNTLPLG DHLLVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	578	584	PKRRKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17500.1	5e-60	ERF family protein