PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005629-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 463aa MW: 50311.1 Da PI: 8.562

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005629-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.8e-41	184	261	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+++ AUR62005629-RA 184 RCQVEGCNLDLSSAKDYHRKHRVCENHSKSPKVVINGLERRFCQQCSRFHSLSEFDQKKRSCRRRLSDHNARRRKPKP 261 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSAISMMELN AKSPFLWDWE NLVMFNTKAA ETPKKLQSDS EIEGIEGFEV GSFYSSGGRS 60 DGGTGSDLGY VSSSKSSKSA SVDSSADREF KGNQISLEAT DCFQQDLRGQ RDLVNTSGTT 120 RASPTIESSV ASGESLIALE LGKRTYFEDV SGASNVKNTA RSSIPPDSVA KKTKSSSPSI 180 ENPRCQVEGC NLDLSSAKDY HRKHRVCENH SKSPKVVING LERRFCQQCS RFHSLSEFDQ 240 KKRSCRRRLS DHNARRRKPK PEVIQFNSMR LTSSLYEGRN QLNFAFDQVP MHQTGHGTWD 300 SARESKVTLV KPGFFTTMKT GGTDQLLSTH SGLPSPTTKV SPVSTQLLPS KGVPSDVFQR 360 GLPVSVAPSN LTAAQDFRAL SLLSTSSWGS CDPEPPALNH SMHTNHASLA PSLATMHPVP 420 LGGPPISSEF WQADQPALGG PGSHTSTFQL FKAPNESSFY LY*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSAISMMELN AKSPFLWDWE NLVMFNTKAA ETPKKLQSDS EIEGIEGFEV GSFYSSGGRS  60
DGGTGSDLGY VSSSKSSKSA SVDSSADREF KGNQISLEAT DCFQQDLRGQ RDLVNTSGTT  120
RASPTIESSV ASGESLIALE LGKRTYFEDV SGASNVKNTA RSSIPPDSVA KKTKSSSPSI  180
ENPRCQVEGC NLDLSSAKDY HRKHRVCENH SKSPKVVING LERRFCQQCS RFHSLSEFDQ  240
KKRSCRRRLS DHNARRRKPK PEVIQFNSMR LTSSLYEGRN QLNFAFDQVP MHQTGHGTWD  300
SARESKVTLV KPGFFTTMKT GGTDQLLSTH SGLPSPTTKV SPVSTQLLPS KGVPSDVFQR  360
GLPVSVAPSN LTAAQDFRAL SLLSTSSWGS CDPEPPALNH SMHTNHASLA PSLATMHPVP  420
LGGPPISSEF WQADQPALGG PGSHTSTFQL FKAPNESSFY LY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	258	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-70	SBP family protein