PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004223-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 785aa MW: 87198.8 Da PI: 6.6675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004223-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.9	6e-37	41	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA r+rdPvyG+v++i++lqqq+ +++ael AUR62004223-RA 41 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDAVVTLCYEALSRVRDPVYGCVAHIFTLQQQVLNMQAEL 135 7*********************9989***************************************************************** PP DUF260 95 allkee 100 a ++++ AUR62004223-RA 136 AFVQAR 141 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MSNHHQPNNH QWHGRGDGGG CGGAGNNNSN SNSNNSGGGG PCGACKYLRR KCVKGCVFAP 60 YFDSEQGTAH FAAVHKVFGA SNASKLLLRI PAHRRLDAVV TLCYEALSRV RDPVYGCVAH 120 IFTLQQQVLN MQAELAFVQA RLSTLQRLPA AFPAVDQTPS HCCLDQISAS STIATTTSTS 180 TAITSMPSFD NFALQSQPSL SPINPAQTQP QIQPISNHSG HDSGQTPSPS INPRINPEPH 240 ISSQFYTFNS ESHALMISCI LENRLATPVE IRSVTPVEVL KSWRSVWKDR NEDTAYLTAW 300 KRIQDKLNAH IDGNGIRYLC FKNNSNQFVS HISQWQEIVM SSHSDSDFKH LGIRETVDKI 360 KQLWTVGAKF YGIPESFIRV CIASCNVCAG VSDGGGGGGG GFSGGRPKRR RFEYTESFDV 420 PAKEVPNKLQ QLAKKHKVVL CIRQKYIRYK PFMAEVKDYA CHRAGEPASS KKNSKVLKRE 480 PYASKRCGCG FRIRAIVPIT NYNEKDKTFV YQEEGMAVFK LYAVHTGHEP GPLDGNARIM 540 HRVVGHKGVF LNDQETEYGV NEELENDSFM GRDESDFGHA VLQQAQELKL EVGLLESRIL 600 KLPQELLDSV SQELYHIVNK VRALGFETSK TVGLDSDKHD SDVMLVGEGD LPHWNDPHDD 660 RLYGDGKDTD LIEEDEDSFG RTLGDVVPWE QMRTDCRSDK DLISESCKPD KWLDTSEFDE 720 KSILSCNSKL TKPMRHDSLD EDVGLVGLQV DSFYQENPKW YDSPCVLDSS TDCGGSEFRH 780 GEIM*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MSNHHQPNNH QWHGRGDGGG CGGAGNNNSN SNSNNSGGGG PCGACKYLRR KCVKGCVFAP  60
YFDSEQGTAH FAAVHKVFGA SNASKLLLRI PAHRRLDAVV TLCYEALSRV RDPVYGCVAH  120
IFTLQQQVLN MQAELAFVQA RLSTLQRLPA AFPAVDQTPS HCCLDQISAS STIATTTSTS  180
TAITSMPSFD NFALQSQPSL SPINPAQTQP QIQPISNHSG HDSGQTPSPS INPRINPEPH  240
ISSQFYTFNS ESHALMISCI LENRLATPVE IRSVTPVEVL KSWRSVWKDR NEDTAYLTAW  300
KRIQDKLNAH IDGNGIRYLC FKNNSNQFVS HISQWQEIVM SSHSDSDFKH LGIRETVDKI  360
KQLWTVGAKF YGIPESFIRV CIASCNVCAG VSDGGGGGGG GFSGGRPKRR RFEYTESFDV  420
PAKEVPNKLQ QLAKKHKVVL CIRQKYIRYK PFMAEVKDYA CHRAGEPASS KKNSKVLKRE  480
PYASKRCGCG FRIRAIVPIT NYNEKDKTFV YQEEGMAVFK LYAVHTGHEP GPLDGNARIM  540
HRVVGHKGVF LNDQETEYGV NEELENDSFM GRDESDFGHA VLQQAQELKL EVGLLESRIL  600
KLPQELLDSV SQELYHIVNK VRALGFETSK TVGLDSDKHD SDVMLVGEGD LPHWNDPHDD  660
RLYGDGKDTD LIEEDEDSFG RTLGDVVPWE QMRTDCRSDK DLISESCKPD KWLDTSEFDE  720
KSILSCNSKL TKPMRHDSLD EDVGLVGLQV DSFYQENPKW YDSPCVLDSS TDCGGSEFRH  780
GEIM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	437	KRRRFEYTESFDVPAKEVPNKLQQLAKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	9e-59	LBD family protein