PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004158-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 498aa MW: 54698.4 Da PI: 6.5445

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004158-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F+++ L H +H AUR62004158-RA 210 FECKACGRTFTSHQALGGHRASH 232 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MCGRALGGHM RAHGIGDESG VFDDDDDPAS EWEEKGGSGG GNTPPSNKRM YALRTNPNRL 60 RSSRVCENCG KEFLSWNTFI EHHGKCNPND VESPLSSPES DGDDVGGSKA SGWSKRKRSF 120 RTKVENYTPN CPSSEEEDLA NCLMMLSNAA VDPVVVEHPD ESSASASKEE ERRHSSMSFI 180 APYMTSRGPP PFDVKAKGVA SNNTNPKGLF ECKACGRTFT SHQALGGHRA SHKKVKGCFA 240 AKMDQVGQDY SYNGEEDTLG GRSDHEFMRP AKSCTTYQFE RGGSSSSLTN MSKRPKTKSH 300 ECSICHRVFT SGQALGGHKR CHWITSNAPD TSTLTRFQEL HDQIEQVHER PPPPIFTPHL 360 SISEQKALDL NLPATNDQDI LKIQRDPRNS LSFRVPTDIL LQSWGSVNVE IKQESHVHHQ 420 DKGLNYENEV ENESDHKKIT NNISVIESNM PNNADDEADS KVKLAKLCEQ DNMSTNGSTS 480 PWLQVGIGPS NAVKASP*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MCGRALGGHM RAHGIGDESG VFDDDDDPAS EWEEKGGSGG GNTPPSNKRM YALRTNPNRL  60
RSSRVCENCG KEFLSWNTFI EHHGKCNPND VESPLSSPES DGDDVGGSKA SGWSKRKRSF  120
RTKVENYTPN CPSSEEEDLA NCLMMLSNAA VDPVVVEHPD ESSASASKEE ERRHSSMSFI  180
APYMTSRGPP PFDVKAKGVA SNNTNPKGLF ECKACGRTFT SHQALGGHRA SHKKVKGCFA  240
AKMDQVGQDY SYNGEEDTLG GRSDHEFMRP AKSCTTYQFE RGGSSSSLTN MSKRPKTKSH  300
ECSICHRVFT SGQALGGHKR CHWITSNAPD TSTLTRFQEL HDQIEQVHER PPPPIFTPHL  360
SISEQKALDL NLPATNDQDI LKIQRDPRNS LSFRVPTDIL LQSWGSVNVE IKQESHVHHQ  420
DKGLNYENEV ENESDHKKIT NNISVIESNM PNNADDEADS KVKLAKLCEQ DNMSTNGSTS  480
PWLQVGIGPS NAVKASP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-22	C2H2 family protein