PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003603-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1024aa MW: 113909 Da PI: 7.6217

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003603-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	128	147	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f+ G C++G++C+F H AUR62003603-RA 128 ICRDFSS-GRCRRGSSCHFLH 147 7****.*********** PP
2	zf-CCCH	22.6	1.9e-07	195	215	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C++ H+ AUR62003603-RA 195 ICNEFLK-GRCRRGDSCRYVHD 215 6****.***********7 PP
3	zf-CCCH	23.2	1.2e-07	279	300	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C+ffa+ G C+ G rCkF+H AUR62003603-RA 279 ETPCKFFAA-GNCRNGTRCKFSH 300 6799999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence
MSGSSKRRHS KWDHKDAEAL PENFYDRAQT RRPREPLSPD RGSRRHDSRS KESAMTWDRE 60 GNCTRISPGL DEWRPRLSSR SPRNGWGRSH RISKSRSRSR SQSPAHNFRR EPAVNDRSRS 120 RSGVPAQICR DFSSGRCRRG SSCHFLHQDE MYDNRRLECS SPEDWESRRQ KTGGSRYSPD 180 DTKDCATRTE KSAHICNEFL KGRCRRGDSC RYVHDDSAGD VFDKGVEDVY RNRDHDLRSR 240 DIYPDHDHRS RDTYRDLDHR RRDTYPDRNH EFEPPKRGET PCKFFAAGNC RNGTRCKFSH 300 QVQEIYSPDR RSRGDRRGPD HKSEGGQVWE GPRWSDATAV STVPAVQGWG EDKNERKEMT 360 TARYKGDGRG PDHKYEGDRG WDGPSWCDVT TVPNNPAAHG WEDDKNEITE VAKDMAGSRP 420 GDDCWSHDML DIKQTRETST NLGKSQIQDK KQALQWKIEN NVPGLTENFS GDMEISPQDI 480 KQQGMNSSSS QTAPNISFSA VQQDVAGEAS YEKHYQAGFQ EQKVFHDPFA DQNPDYKDNK 540 PMLNSGERRD VRDHDGSCIV QNQPLNLPQG QGNFQPDQSV NVRPNTNINP PLGQTQLSLP 600 SHSLPGQSQP SIPSHPPGKI QLSIPPQSPL GQSQFSLFSH PPEQNQPSLC SHPPPGQNQL 660 PLPGPPPGQN QLPLPGPPPP GQNQLPLPGP PPPGQNQLPL PGPPPPGQIQ LPFPGLPSPG 720 QNQLSVSSQN AGQGQLSPSS HLSQGEAMQR QLSHNPSAFL DKKVDGSHAV SLASSEAAPE 780 SATAQSSVSN EQLAQLSHLT ASLTQLLESR QQLSQFSTAV TPCSLSNPPD IAEPVPPVSA 840 AIIQLNQAPE ALKPYDPLCN SVEPKMPNLG NHLLSVEQNI SKNEIHNKDD VTQQEPLAAS 900 KDEKYGKTTD EGIIKAPENG PSQDMGADDG ADDDKKLKDT KGLRQFKFAL AEFVKELLKP 960 SWKDGHVSKD AYKTIVKKVV DKVTETLGPQ IPQTKEKIDM YLSCSKQKID KLVQAYVGKH 1020 QKS*

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence

MSGSSKRRHS KWDHKDAEAL PENFYDRAQT RRPREPLSPD RGSRRHDSRS KESAMTWDRE  60
GNCTRISPGL DEWRPRLSSR SPRNGWGRSH RISKSRSRSR SQSPAHNFRR EPAVNDRSRS  120
RSGVPAQICR DFSSGRCRRG SSCHFLHQDE MYDNRRLECS SPEDWESRRQ KTGGSRYSPD  180
DTKDCATRTE KSAHICNEFL KGRCRRGDSC RYVHDDSAGD VFDKGVEDVY RNRDHDLRSR  240
DIYPDHDHRS RDTYRDLDHR RRDTYPDRNH EFEPPKRGET PCKFFAAGNC RNGTRCKFSH  300
QVQEIYSPDR RSRGDRRGPD HKSEGGQVWE GPRWSDATAV STVPAVQGWG EDKNERKEMT  360
TARYKGDGRG PDHKYEGDRG WDGPSWCDVT TVPNNPAAHG WEDDKNEITE VAKDMAGSRP  420
GDDCWSHDML DIKQTRETST NLGKSQIQDK KQALQWKIEN NVPGLTENFS GDMEISPQDI  480
KQQGMNSSSS QTAPNISFSA VQQDVAGEAS YEKHYQAGFQ EQKVFHDPFA DQNPDYKDNK  540
PMLNSGERRD VRDHDGSCIV QNQPLNLPQG QGNFQPDQSV NVRPNTNINP PLGQTQLSLP  600
SHSLPGQSQP SIPSHPPGKI QLSIPPQSPL GQSQFSLFSH PPEQNQPSLC SHPPPGQNQL  660
PLPGPPPGQN QLPLPGPPPP GQNQLPLPGP PPPGQNQLPL PGPPPPGQIQ LPFPGLPSPG  720
QNQLSVSSQN AGQGQLSPSS HLSQGEAMQR QLSHNPSAFL DKKVDGSHAV SLASSEAAPE  780
SATAQSSVSN EQLAQLSHLT ASLTQLLESR QQLSQFSTAV TPCSLSNPPD IAEPVPPVSA  840
AIIQLNQAPE ALKPYDPLCN SVEPKMPNLG NHLLSVEQNI SKNEIHNKDD VTQQEPLAAS  900
KDEKYGKTTD EGIIKAPENG PSQDMGADDG ADDDKKLKDT KGLRQFKFAL AEFVKELLKP  960
SWKDGHVSKD AYKTIVKKVV DKVTETLGPQ IPQTKEKIDM YLSCSKQKID KLVQAYVGKH  1020
QKS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-09	C3H family protein