PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62003152-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31403.6 Da    PI: 8.1375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62003152-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-19124178256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  AUR62003152-RA 124 RKKLRLTKDQSALLEESFKQQSTLNSKQKQALADRLNLRPRQVEVWFQNRRARTK 178
                     78889************************************************98 PP
2HD-ZIP_I/II119.81.5e-38124212190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k+q++lLEesF+++++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +
  AUR62003152-RA 124 RKKLRLTKDQSALLEESFKQQSTLNSKQKQALADRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKELQELK-A 212
                     69*************************************************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MVSPSDNQEQ TLTLGLGFSS ISSAKTKNPI LGPGTKSCDH EPSLTLSLLG ETYQTTTAVA  60
AVERKVFVDQ EPPCSVSVAS SLSNVVSVKR ERESASSDDL ELERGSSRIS DEEEDGCGPT  120
NTPRKKLRLT KDQSALLEES FKQQSTLNSK QKQALADRLN LRPRQVEVWF QNRRARTKLK  180
QTEVDCEYLK KCCETLTDEN RRLQKELQEL KALKLGQPFY MHLPAATLTM CPSCEKIGAG  240
VSVGVPTIPG TPTTNSTPAS KTAFTLCPSK SHFYPQQQIR PLLVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-66HD-ZIP family protein