PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002529-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18542.6 Da    PI: 10.2814
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002529-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.6e-171052244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    +i+n s r  t+ kR +g++KK eELSvLC+++++ ii++++ 
  AUR62002529-RA 10 FIQNASTRRATYKKRVQGLIKKTEELSVLCGVDACTIIYGPNE 52
                    89**************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MARKKVNLAF IQNASTRRAT YKKRVQGLIK KTEELSVLCG VDACTIIYGP NEEGPIVWPP  60
SEVEAKRIIS DFKRKPEVYQ SQRKFNQETF LSESIKKVED KLLKLKKKNR EIEVGKMVSD  120
ILNGKSTLKE INSSDLGDLL WVIEDKIKTI EYRIRVTKEG K*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-30M-type_MADS family protein