PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62002527-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23215.3 Da PI: 8.3284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.7 | 9.6e-16 | 11 | 54 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 i++ r+ ++++R +g+lKK eE+SvLCd++++ ii+++++++ AUR62002527-RA 11 IKDVASRKSSLTNRSHGLLKKTEEMSVLCDVDACAIIYGKDDQV 54 788899**********************************9875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MSRKNVKLSI IKDVASRKSS LTNRSHGLLK KTEEMSVLCD VDACAIIYGK DDQVPLVWPS 60 SETEVRRIIN NYKSMSHVGQ SERQLDQQSL LKQTVQKNEE KLARIQSKNR ELQMENIITD 120 IMTGRATLEQ VPPCDLDYMI RVLQERMKLV KNRISNWENN INNPPFQNSN TNRDDNLKIN 180 SSLCHEDGVM EASTSRNNHT SE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-23 | M-type_MADS family protein |