PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62002086-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 340aa MW: 37284.2 Da PI: 7.2702

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62002086-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.4	3.2e-10	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ G C+y +C+FaHg AUR62002086-RA 92 YKTKLCCKFRA-GVCPYVTNCNFAHG 116 9********.***********9 PP
2	zf-CCCH	17.5	7.6e-06	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ AUR62002086-RA 166 YKGRHCKKFYTEEGCPYGENCTFLHD 191 78888********************7 PP
3	zf-CCCH	43.3	6.1e-14	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG C++G++C+FaHg AUR62002086-RA 224 WKTRICNKWETTGSCPFGSKCHFAHG 249 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MDFGTEPGFS EMGGSFDNWG GINPNDQAIW ATEDEYRSWN GSETPSSNYH LALPLRSGSG 60 AGAEPPNKKT RSSQSGDSAA SSRSKAIGKM FYKTKLCCKF RAGVCPYVTN CNFAHGLEEL 120 RKPPPNWQEI VAAHEEERGV TVEQREEHQI PTISTTELRN ESPKTYKGRH CKKFYTEEGC 180 PYGENCTFLH DEQSRARESV AISVSPTVGG AFGANGPTQK PSNWKTRICN KWETTGSCPF 240 GSKCHFAHGL AELHKFTGTE GEGRDSSVLT ETKPSGMTTK TDASPSLSTP RQEYHHVGLG 300 IPSQRTSSVP QAVGQRPAQK WKGPDKISRI YGDWIDDIE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-104	C3H family protein