PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62001962-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 229aa    MW: 24112.4 Da    PI: 7.3358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62001962-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.89.3e-4471061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp++f nvhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l 
  AUR62001962-RA   7 PCAACKFLRRKCTQECVFAPYFPPDQPQRFSNVHKVFGASNVAKLLNDLDATQREDAVNSLAYEAEARLRDPVYGCVGLISLLQHRLKQVQTDLY 101
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     ++k+e
  AUR62001962-RA 102 SAKKE 106
                     99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQRFSNVH KVFGASNVAK LLNDLDATQR  60
EDAVNSLAYE AEARLRDPVY GCVGLISLLQ HRLKQVQTDL YSAKKELATY IGPTALMPMI  120
QPGYANPGSS SGVNLMQQQY HMGPMMGIPT GVAAAGPALV IAGGSGGGGF NQAGPSSGAV  180
SPSLALGAAT FDPNPYAQIQ PQQPPPQQQP PQDDQSLGQL LLLQQPLS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-80LBD family protein