PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554416.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 671aa MW: 77905.9 Da PI: 7.0845

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.6e-24	76	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++++fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke ++w+v+++++ HnHel XP_023554416.1 76 EYYSNFARKNGFSIRKARSTESQNLG-VYRQDFVCYRSGYNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVSQWYVSQFSNVHNHELL 167 69******************8888.**************************************998767789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SARLVKSETV PSQLSSESVF 60 TPYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRQDFVCY RSGYNQPRKK 120 ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK 180 IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA 240 LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENVSFD TSYRSLTYGL LLGVWFGMSN 300 HGKAIIFGCV LLQEENSHSF SWALQKFVQF MRGKHPRTIL TDIDSGLRDA ISRELPNTKH 360 VVCIWHILSK LSSWFLLPLG LHYADFKVQF DMLWHLENIS DFEHQWDLLV AQFGLASDKH 420 IALLYLYRAS WPFSFIRSSF LARTLTADFF QSLETFLKRI LGAQTCLQVF FEQVSNAAYS 480 RSRAKEGMQY LHIKTGMPIE EHAQSTLTPY AFNVLQNEIV LSMQYVATEM GNGSYLLQHY 540 KKMDVERLVS WTQDDEQVHC ACKEFDHSGI LCRHSIRVLA VKNYFKLPDK YFLLRWRQNS 600 LGTIDDAHSQ GRSEACAQVF HSLAATLLTE SLISQERFNY VHRELSGLLE HVRTMPVVDE 660 FSLTVNEFND P

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SARLVKSETV PSQLSSESVF  60
TPYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRQDFVCY RSGYNQPRKK  120
ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK  180
IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA  240
LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENVSFD TSYRSLTYGL LLGVWFGMSN  300
HGKAIIFGCV LLQEENSHSF SWALQKFVQF MRGKHPRTIL TDIDSGLRDA ISRELPNTKH  360
VVCIWHILSK LSSWFLLPLG LHYADFKVQF DMLWHLENIS DFEHQWDLLV AQFGLASDKH  420
IALLYLYRAS WPFSFIRSSF LARTLTADFF QSLETFLKRI LGAQTCLQVF FEQVSNAAYS  480
RSRAKEGMQY LHIKTGMPIE EHAQSTLTPY AFNVLQNEIV LSMQYVATEM GNGSYLLQHY  540
KKMDVERLVS WTQDDEQVHC ACKEFDHSGI LCRHSIRVLA VKNYFKLPDK YFLLRWRQNS  600
LGTIDDAHSQ GRSEACAQVF HSLAATLLTE SLISQERFNY VHRELSGLLE HVRTMPVVDE  660
FSLTVNEFND P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein