PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554407.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 694aa MW: 80412.6 Da PI: 6.9215

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	76	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++++fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke ++w+v+++++ HnHel XP_023554407.1 76 EYYSNFARKNGFSIRKARSTESQNLG-VYRQDFVCYRSGYNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVSQWYVSQFSNVHNHELL 167 69******************8888.**************************************998767789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SARLVKSETV PSQLSSESVF 60 TPYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRQDFVCY RSGYNQPRKK 120 ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK 180 IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA 240 LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENGKVE NLSWAYGDPI HAYSVFGDVV 300 SFDTSYRSLT YGLLLGVWFG MSNHGKAIIF GCVLLQEENS HSFSWALQKF VQFMRGKHPR 360 TILTDIDSGL RDAISRELPN TKHVVCIWHI LSKLSSWFLL PLGLHYADFK VQFDMLWHLE 420 NISDFEHQWD LLVAQFGLAS DKHIALLYLY RASWPFSFIR SSFLARTLTA DFFQSLETFL 480 KRILGAQTCL QVFFEQVSNA AYSRSRAKEG MQYLHIKTGM PIEEHAQSTL TPYAFNVLQN 540 EIVLSMQYVA TEMGNGSYLL QHYKKMDVER LVSWTQDDEQ VHCACKEFDH SGILCRHSIR 600 VLAVKNYFKL PDKYFLLRWR QNSLGTIDDA HSQGRSEACA QVFHSLAATL LTESLISQER 660 FNYVHRELSG LLEHVRTMPV VDEFSLTVNE FNDP

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MFSPEMAMKL PANIWIRRQQ CPCGDWKCYI RYEGEDQASI SARLVKSETV PSQLSSESVF  60
TPYVGQIFKS DEDAFEYYSN FARKNGFSIR KARSTESQNL GVYRQDFVCY RSGYNQPRKK  120
ANVEHPRERK SVRCGCDAKL YLTKEIVDGV SQWYVSQFSN VHNHELLEDD QVRLLPAYRK  180
IQEADQERIL LLSKAGFPVN RILKVLELEK GVQPGQLPFI EKDVRNFVRT CKKTVEENDA  240
LLNEKRENEL LELLEICKAM AKRDTEFVFD YTRDENGKVE NLSWAYGDPI HAYSVFGDVV  300
SFDTSYRSLT YGLLLGVWFG MSNHGKAIIF GCVLLQEENS HSFSWALQKF VQFMRGKHPR  360
TILTDIDSGL RDAISRELPN TKHVVCIWHI LSKLSSWFLL PLGLHYADFK VQFDMLWHLE  420
NISDFEHQWD LLVAQFGLAS DKHIALLYLY RASWPFSFIR SSFLARTLTA DFFQSLETFL  480
KRILGAQTCL QVFFEQVSNA AYSRSRAKEG MQYLHIKTGM PIEEHAQSTL TPYAFNVLQN  540
EIVLSMQYVA TEMGNGSYLL QHYKKMDVER LVSWTQDDEQ VHCACKEFDH SGILCRHSIR  600
VLAVKNYFKL PDKYFLLRWR QNSLGTIDDA HSQGRSEACA QVFHSLAATL LTESLISQER  660
FNYVHRELSG LLEHVRTMPV VDEFSLTVNE FNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein