PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554072.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family BBR-BPC
Protein Properties Length: 309aa    MW: 34621.3 Da    PI: 10.3161
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind358.61.3e-10913091301
       GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                     mdd  ++e  r+k  y++              ++ ++l   +++++ms+iaerda+irernlalsekk+a+a+rd+a+ qrd+a+a+r+ al+er
  XP_023554072.1   1 MDDGRHHEngRHKLdYFRgspspwhmapphhvKEpNALV--MNKKIMSIIAERDAAIRERNLALSEKKGALAARDEALRQRDEAIAQRDSALMER 93 
                     777766666888887888999999999876663335666..99**************************************************** PP

       GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                     dn+l+al+ ++n+  s+ p g ++ ++tk +++l + + p ++++++++++ ++++a+pi+  a+ + ++++k+  ++a + k++k  +kk  +e
  XP_023554072.1  94 DNALAALEIRDNA--SNFPLGNGIQRKTKRLHHLSN-HMPSMSETPYGTKDVHITDAFPITVIASRQGNRTTKD--NKAVSSKTSKLPRKKV-GE 182
                     *********9998..77899999*********9998.77*********************99887777666555..3444445555444444.66 PP

       GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
                     + +++ ++++  ++ +++++ +d++ln vs+D+s++P+PvCsCtG  rqCYkWGnGGWqS+CCtt +S+yPLP ++++r+ R++grKmS+++f k
  XP_023554072.1 183 DLNRQAATDG--TKYRTDWDGQDVGLNLVSFDDSSMPAPVCSCTGLARQCYKWGNGGWQSSCCTTHMSMYPLPHMPNKRHVRMGGRKMSGSVFMK 275
                     7778888877..679******************************************************************************** PP

       GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     lL++Laa G+dls pvDLkdhWA+HGtn+++tir
  XP_023554072.1 276 LLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 309
                     *********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDDGRHHENG RHKLDYFRGS PSPWHMAPPH HVKEPNALVM NKKIMSIIAE RDAAIRERNL  60
ALSEKKGALA ARDEALRQRD EAIAQRDSAL MERDNALAAL EIRDNASNFP LGNGIQRKTK  120
RLHHLSNHMP SMSETPYGTK DVHITDAFPI TVIASRQGNR TTKDNKAVSS KTSKLPRKKV  180
GEDLNRQAAT DGTKYRTDWD GQDVGLNLVS FDDSSMPAPV CSCTGLARQC YKWGNGGWQS  240
SCCTTHMSMY PLPHMPNKRH VRMGGRKMSG SVFMKLLSRL AAAGHDLSVP VDLKDHWARH  300
GTNRYITIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-129BBR-BPC family protein