PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553504.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 364aa    MW: 41439.3 Da    PI: 9.6146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F  ++ L++H +  H
  XP_023553504.1 119 YLCRVCGRNFYANEKLVNHFKQiH 142
                     56*****************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MIAFIRFRNL SFHFRKETEL ISRFHSGTNL KSNSPDSSCS AVAIFWDLDN KPPKSLPPYE  60
AAVKLKAAAA SFGAVRYMVA YANRHAFSNV PQVVREKRRE RKMLNQLERK GVIKSIEPYL  120
CRVCGRNFYA NEKLVNHFKQ IHESEHKKRL NQIESAKGSR RVKLLAKYSM KIQKYKNAAR  180
DVLTPKEGYG LADELKRAGF FVKTVSDKPE AADVELRNDM VEVMDRRRAE CLVLVSDDSD  240
FVNVLKEAKL RCLRTVVVGD LNDGPLKRNA DTGFSWKEIL MGKAKKAAVS VVGKWKDRDV  300
LKRLEWTYNP ELEKEVFGLD DDMGEDEDVE QGSVDENMTN GDSGAWWDLS SDAKTEAVSS  360
RSCK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-138C2H2 family protein