PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552809.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 386aa MW: 40945 Da PI: 9.1328

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.3	4.7e-41	62	197	2	114
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ ++ XP_023552809.1 62 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTVLAPshlrtsy 156 789******************************************************************99976666666666222224455567 PP TCP 89 ...............kaaksaakskksqksaasalnlakes 114 ++++++++++++++++++++ l ++s XP_023552809.1 157 fsptqfavrtrsdlwDRSNNNNNNNNNHNNNNNNNTLVDDS 197 77777777777777644444444555555555455555544 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MIMDGENGIR RPNFPLQLLE KKEEEHPCST SANNGTTTTT TTTTTTTAVN PNLQSSSPKK 60 PPPKRATTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAVI 120 AATGTGTIPA NFTSLNISLR SSGSTVLAPS HLRTSYFSPT QFAVRTRSDL WDRSNNNNNN 180 NNNHNNNNNN NTLVDDSSTF LNFNSPNYIN AFKHDQGGID VTDAGKKRRP ENSESSSENP 240 VGNYLIQSST GSIPASHSTP VPATFWMVTN PSNQASDPMW TFPSVSNSSM FRGGSGGGGG 300 GGGGGFHFMN LPPPMALLPT GQQVGSGIGG GSGVPATDTH LGMLAALSAY RTIPGVSISE 360 SPTRGAAAVH QGGNEAHDST SNRDQS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MIMDGENGIR RPNFPLQLLE KKEEEHPCST SANNGTTTTT TTTTTTTAVN PNLQSSSPKK  60
PPPKRATTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAVI  120
AATGTGTIPA NFTSLNISLR SSGSTVLAPS HLRTSYFSPT QFAVRTRSDL WDRSNNNNNN  180
NNNHNNNNNN NTLVDDSSTF LNFNSPNYIN AFKHDQGGID VTDAGKKRRP ENSESSSENP  240
VGNYLIQSST GSIPASHSTP VPATFWMVTN PSNQASDPMW TFPSVSNSSM FRGGSGGGGG  300
GGGGGFHFMN LPPPMALLPT GQQVGSGIGG GSGVPATDTH LGMLAALSAY RTIPGVSISE  360
SPTRGAAAVH QGGNEAHDST SNRDQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	8e-50	TCP family protein