PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552240.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 350aa    MW: 37966.5 Da    PI: 5.9758
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17257290134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_023552240.1 257 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MIGNSLGDEI DCGSFFDHID DLLDFPVEDV DLGLPPVNRG DSANSFPTIW PTHSESLPGS  60
VSVFSANDNA DLSAQLSVPY EDIVQLEWLS NFVEDSFRGG SLTMNKEEPK DLTYNQFQTS  120
SPVSVLESSS SCSSDKSLPS RSSPEQTVAT PGQQRGRARS KRPRPATFSP RPPIQLISPA  180
SSVTETATPD QPLQLAPKAP SDADNFAESQ PLIKMPKHGS ASGIQNTKNK KIKLSFSLAP  240
LDAATGNQSS PSSVRKCMHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFIPSLHSN SHKKVLEMRN KVDENTNAIT ISVQPELIPN TNSAISMDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-42GATA family protein