PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552215.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 380aa MW: 41782 Da PI: 6.4453

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.5e-28	136	196	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK + g+++pr+YYrCt++ gC ++k+v+rs++dp+v+eitY+g+H ++ XP_023552215.1 136 DDGFCWRKYGQKGILGARHPRGYYRCTHRnlqGCLATKQVQRSDHDPNVFEITYRGTHSCT 196 8*************************99999***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MDSFGEWDQK KKLKNELLKG KELAKQLLIH LNVRPSTSSM AAAAASSSSA SNDGSELLVQ 60 KILSSYEKAL SLLSSNGIQI SESPSSLNGS PRSEDSDREF KDHDHTNASS RTRNILPTWT 120 QKFQVSPGMA LEGSFDDGFC WRKYGQKGIL GARHPRGYYR CTHRNLQGCL ATKQVQRSDH 180 DPNVFEITYR GTHSCTQVIP SASTEFQQQN HPLLLPDQRV QNQQTSPDAL LSSCPSLRVI 240 TENLDTTHDP TLFHPFNYDP TSNYEAADRV ESGSTLRANV NFSEFSPPPF LSPTTSGSGL 300 SYFSASSSGL SYFSASSSGL SEGFVGHHQK LDLQPNKSEL SEIFSSPTSA SNSATPGLDF 360 PFGELQMEPT FTFHNTNFFS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MDSFGEWDQK KKLKNELLKG KELAKQLLIH LNVRPSTSSM AAAAASSSSA SNDGSELLVQ  60
KILSSYEKAL SLLSSNGIQI SESPSSLNGS PRSEDSDREF KDHDHTNASS RTRNILPTWT  120
QKFQVSPGMA LEGSFDDGFC WRKYGQKGIL GARHPRGYYR CTHRNLQGCL ATKQVQRSDH  180
DPNVFEITYR GTHSCTQVIP SASTEFQQQN HPLLLPDQRV QNQQTSPDAL LSSCPSLRVI  240
TENLDTTHDP TLFHPFNYDP TSNYEAADRV ESGSTLRANV NFSEFSPPPF LSPTTSGSGL  300
SYFSASSSGL SYFSASSSGL SEGFVGHHQK LDLQPNKSEL SEIFSSPTSA SNSATPGLDF  360
PFGELQMEPT FTFHNTNFFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	3e-48	WRKY family protein