PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552055.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24513 Da    PI: 8.6401
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr g++KKA+EL +LCda++a+i+fs +gkl++yss
  XP_023552055.1  9 KKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS 59
                    689**********************************************96 PP
2K-box50.11.2e-17851681598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  +   a+L++e     +e+Rh++Ge+Le+L ++eL+qLe+ Le +l+++ ++K+e +l++i+  ++ke  l +en++Lr+++
  XP_023552055.1  85 QMEKSVCANLREEFAAKNKELRHMKGEELEELGIEELKQLEKLLEIGLNRVLETKDEKFLKEIDAVKEKEALLMKENQRLRNRV 168
                     445556789999999999***************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRQKIQIKK IDNIAARQVT FSKRRRGLFK KAHELATLCD ADIALIVFSA SGKLFDYSSS  60
SMHELLGRHN KLPEVNNFCQ PLSQQMEKSV CANLREEFAA KNKELRHMKG EELEELGIEE  120
LKQLEKLLEI GLNRVLETKD EKFLKEIDAV KEKEALLMKE NQRLRNRVRA LNRDEQEQQA  180
VGVGGSSLGS KSITSNSSSS PNPSSQDCDD ISLKLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-41MIKC_MADS family protein