PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551845.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 591aa    MW: 64754.8 Da    PI: 5.258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.42.1e-1092185912374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Ll+cA+  +s +  +a + L+r+s+   ++gdp++R+a++f eAL++rl+    + +k + ++++s+ ns++ l ++k++++++P+ kf+hl
  XP_023551845.1 218 LKVLLDCARLCDS-EPDRAVKNLNRISKSLREHGDPVERVAFHFGEALRSRLSP---TAMKNCLVTTDSDANSEDFLLSYKALNDACPYSKFAHL 308
                     679******8877.77888999*******************************9...666666666677799*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +ed
  XP_023551845.1 309 TANQAILEATQTASKIHIVDFGIVQGVQWAALLQALATRATGKPiKVRISGIPAPSLGdsPAASLCATGNRLSEFAKLLELNFEFEP-ILTPIED 402
                     ****************************************88887**********999889999***********************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+++E+laVn++lql++llde  ++ +   + L l kslsPk++++ e ea++n+ +F +rf +al++ysa+f+sle +lpr+s er+
  XP_023551845.1 403 LNESSFRVQSDEVLAVNFMLQLYNLLDEVPTVVH---NALLLAKSLSPKILTLGEYEASLNRVEFYNRFKNALKFYSAIFESLEPNLPRDSPERH 494
                     **************************99888888...999******************************************************* PP

            GRAS 284 kvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372
                      +E++llgr+i  vv  e+++    rr r+e +e+W++ le++GFkpv+ls++a +qak ll +++ s  y++ e+  +++ l W+d pL++vS+
  XP_023551845.1 495 QLEKQLLGRRIAGVVGSEEESgskrRRVRMEAKEQWKNLLESSGFKPVALSHYAISQAKILLWNYNySSLYTLIESTPEFLsLAWNDVPLLTVSS 589
                     ***************9987543334899**************************************9999****99999999************* PP

            GRAS 373 Wr 374
                     Wr
  XP_023551845.1 590 WR 591
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQDQQQH HLSPHLPWTN SNPSPTMASS SPTFTFGISG  60
SAFSDPFQVA GAADSTDQPF HFSNLEHPST TGFRFFTNFG GGGGGGGEFE SDEWMDSLVG  120
GRDSTDSSDL PHGCDGYGEF GLYGADPFNG SPPSLFYREL LPEGSYKTNS VLPPLPSSPP  180
PVKDAKVANS MAGSLQKNNV VESSSSAPEI DSSSPPLLKV LLDCARLCDS EPDRAVKNLN  240
RISKSLREHG DPVERVAFHF GEALRSRLSP TAMKNCLVTT DSDANSEDFL LSYKALNDAC  300
PYSKFAHLTA NQAILEATQT ASKIHIVDFG IVQGVQWAAL LQALATRATG KPIKVRISGI  360
PAPSLGDSPA ASLCATGNRL SEFAKLLELN FEFEPILTPI EDLNESSFRV QSDEVLAVNF  420
MLQLYNLLDE VPTVVHNALL LAKSLSPKIL TLGEYEASLN RVEFYNRFKN ALKFYSAIFE  480
SLEPNLPRDS PERHQLEKQL LGRRIAGVVG SEEESGSKRR RVRMEAKEQW KNLLESSGFK  540
PVALSHYAIS QAKILLWNYN YSSLYTLIES TPEFLSLAWN DVPLLTVSSW R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518522KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein