PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551517.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 328aa    MW: 35196.8 Da    PI: 4.5493
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18264297134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  XP_023551517.1 264 CLHCEVTKTPQWRAGPLGPKTLCNACGVRYKSGR 297
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MEGSLGDEID CGNCFDHIDD LLDFSTEDLD DVLMTTTVTA APFPSIWSTA AAFPSIWSTA  60
AAFPPIWSTT AAVADTGCSS IGLTNDPIWS AAVADTDCSI ASIGLTNDPI WSAAVADTDC  120
SIASIGLPNE LYEDIMPSEW FSNLDDSFAG AGTQTVSSSS SESNKFRVSS PVSVLDNSSE  180
SSSSKRKEQA DDACRRDDAS SKRPRQSFFI PPPPHLVSPT SSSDSENSEN SENYGESCSP  240
PPAEKKIKLS SNDAFNPRGG SRRCLHCEVT KTPQWRAGPL GPKTLCNACG VRYKSGRLYP  300
EYRPAASPSF VSRLHSNSHK KVIQMRIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.26e-36GATA family protein