PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551167.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 476aa    MW: 52490.9 Da    PI: 5.3149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.91.4e-95794612373
            GRAS   2 velLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPi 90 
                      +lL+++A+a+  ++++  laq +L rl+el ++++g++++Rl+ay+++  +  l    vs+   + +p + ++++   +++laa++l++e+sP+
  XP_023551167.1  79 YHLLMAVADAMFGDHKSrdLAQVILIRLNELvSTSHGTNLERLTAYYAQSFQDLLDYaAVSGGG-SNKPHHLHRDDhsPTDVLAAFQLLQEMSPY 172
                     699*******9765544449***********777889******************984444444.4444444333335999************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                     +kf+h+taNqaIleav+ ++rvHi+D++i++G+QW++L+qaL sR+++pp  +lRiT++++  s+     +++etg+rL  fA+++g pf+f+  
  XP_023551167.1 173 VKFGHFTANQAILEAVADDRRVHIVDYNIMEGIQWASLMQALVSRKDSPPapHLRITAISRGPSSrrWIGTVQETGRRLVAFAASIGQPFSFHQC 267
                     **********************************************554444********96555567789***********************9 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdslea 273
                       ++ e+++++ L++ +gEal+Vn+vl+l ++ +   ++++ +d++L   k+l+P++v++ve+e++h+ +   ++  +fl++le ysa++dslea
  XP_023551167.1 268 KLDSDESFRPSGLKLVRGEALVVNCVLHLPHFSN---TSPESIDSFLAGAKTLNPRLVTLVEEEIEHGPTidgDYKVQFLDSLERYSAIYDSLEA 359
                     999*****************************83...3334467***********************744444********************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerre..rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdr 365
                     ++p ++++r  vE+++lg++i+  +   g+ +r+    e+  +W erle++G+k++++s  + +qa+ll+  ++ dgyrvee  s+ lvlgWk++
  XP_023551167.1 360 GIPMKNRARGLVEKVFLGPRISATLKRIGQPQRAatAAEENCSWGERLEKMGLKAAAISFANHCQARLLVDLFN-DGYRVEELgSNKLVLGWKSK 453
                     **************************99988554114577789*******************************.******987999******** PP

            GRAS 366 pLvsvSaW 373
                     +L+svS W
  XP_023551167.1 454 RLLSVSIW 461
                     ******** PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MAMAVDNAFN GVAVSDYSTS TNNSDDDFHD LFDSIMSIDA LPYSPQVVEV DGGTNCNSPS  60
NPAEDREEEE EEFKSLRLYH LLMAVADAMF GDHKSRDLAQ VILIRLNELV STSHGTNLER  120
LTAYYAQSFQ DLLDYAAVSG GGSNKPHHLH RDDHSPTDVL AAFQLLQEMS PYVKFGHFTA  180
NQAILEAVAD DRRVHIVDYN IMEGIQWASL MQALVSRKDS PPAPHLRITA ISRGPSSRRW  240
IGTVQETGRR LVAFAASIGQ PFSFHQCKLD SDESFRPSGL KLVRGEALVV NCVLHLPHFS  300
NTSPESIDSF LAGAKTLNPR LVTLVEEEIE HGPTIDGDYK VQFLDSLERY SAIYDSLEAG  360
IPMKNRARGL VEKVFLGPRI SATLKRIGQP QRAATAAEEN CSWGERLEKM GLKAAAISFA  420
NHCQARLLVD LFNDGYRVEE LGSNKLVLGW KSKRLLSVSI WASSSLSSSS SSSDSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-142GRAS family protein