PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023550720.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 236aa    MW: 26012.5 Da    PI: 8.8396
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023550720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY223.36.9e-69361955170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnvekeesastsvss 98 
                      ++eq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhCt+ll vn  ++  ll++ +++++ ++ + +le+  + + n+  n+ + +++  +   
  XP_023550720.1  36 AAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVN--MRGLLLPSPNQFHHLGHSHnILENIPTPNPNYLINQFAATNNFVTP-- 126
                     679****************************************66..5667788888877776655488998888888877776655544333.. PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        s+   +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  XP_023550720.1 127 ---SRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 195
                     ...4567889***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MSSSSSSSSP TSTATATTTT TTTLSQQQLL DHHLPAAAEQ LCYVHCNICD TVLAVSVPCS  60
SLFKTVTVRC GHCTNLLPVN MRGLLLPSPN QFHHLGHSHN ILENIPTPNP NYLINQFAAT  120
NNFVTPSRGV IDELPRPPVI NRPPEKRQRV PSAYNRFIKD EIQRIKSVNP DISHREAFSA  180
AAKNWAHFPH IHFGLMPDQK VKKTNIRQQE AEQSVLMKDN GGFYASAAAN VGVSHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-78YABBY family protein