PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550518.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 278aa MW: 31436.8 Da PI: 10.0567

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	142.9	2.4e-44	103	231	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWLl ++ aik+l +++++++s ++ + s s+s++ +k+ + XP_023550518.1 103 TGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKNNNNNNNSGVS-HGSACSGSSEVVSKQDAGGSI 196 79************************************************************777774442.222222222333334444446 PP TCP 97 skksqksaasalnlakesrakarararertrekmr 131 + +++k+ + + + +esra+arararert k++ XP_023550518.1 197 GTPKHKKGRQLQTIGRESRARARARARERTMLKKS 231 6666666776788888************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MDQEHEENSS YLHFPHPFLD DEDLFLTHFL SQQQQQQQQL VSGGDCWKEQ DQEQEQEKAD 60 DVGHDHKQNS EKKGRRSLEV KKKKKGSSSN SNRKNGSSTT KRTGKKDRHS KICTAQGPRD 120 RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLLSHSNSAI KALKNNNNNN NSGVSHGSAC 180 SGSSEVVSKQ DAGGSIGTPK HKKGRQLQTI GRESRARARA RARERTMLKK SPQPISISQH 240 YLNSDETHLE DCPKVFAFSD DLSSIHTFFS GNITTFLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	225	RARARARARER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-31	TCP family protein