PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549946.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 294aa MW: 33315.4 Da PI: 5.1327

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.3e-40	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+kdC+lapyfpa+qpk f+n+h+lFG+ n++k+l++++ ++++++m+s++ye+++rar Pv+G++gv+++l+ q++q+++el XP_023549946.1 10 ACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILRQVHASQKDETMTSIIYESNMRARFPVHGCCGVLWQLHYQIQQVAEELR 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_023549946.1 105 QVRTR 109 98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MTIKGGTSQA CAACKYQRRR CSKDCALAPY FPADQPKMFQ NAHRLFGVCN IMKILRQVHA 60 SQKDETMTSI IYESNMRARF PVHGCCGVLW QLHYQIQQVA EELRQVRTRL AMFKDQFIPG 120 MAEGNFGSND MVYPIYTQQQ QQQQLQQYNS GLLVNQATDG NDLLFGNVNS GGIYLDNDDN 180 NGLMLKDLRI QQHYNDNYGI NISNVDSMLM QSNLIPTTVQ GYPLQQEMEI SHDYDEIPFD 240 TIADDRQSYI ESKEACDSSA ESTFKDVSEA SAEYVSRSDL KNAAACFSLT SHIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	8e-47	LBD family protein