PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549473.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 342aa MW: 36860.4 Da PI: 9.9564

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.6	7.8e-37	67	170	3	104
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg 88 + + +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ ++ sss+++s XP_023549473.1 67 PTRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTVPAIAMsvngtlkipTTTSSSNQDS----- 156 56899**********************************************************888884443222233222222222222..... PP TCP 89 kaaksaakskksqksa 104 a ++a++k+++++a XP_023549473.1 157 --ADQSATKKRRKRPA 170 ..11111111111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MADIHKQELD DHHHHSPPTH LCINNSDSSP INLLPLAPKR EHPDNDHKTQ VVKFTAEIPK 60 TVSSIPPTRP STKDRHTKVE GRGRRIRIPA TCAARIFQLT RELGHKSDGE TIRWLLERAE 120 PAIIAATGTG TVPAIAMSVN GTLKIPTTTS SSNQDSADQS ATKKRRKRPA NSDYVDVNDA 180 VSVSVSASAS NGAVQAATVA GSPAVQQPFP PGFVPVWAIP SNAIIPGAVF MVPSVDCSST 240 RPQFFSFPTP AAPLINTTAR PISTVPSKLH TSHIQANTTN QSSSTSNSSA SKSESVMAPI 300 SSSTVTTNGK TTKQMLREFS LEIYDKEELQ FMSRSSERMK TE

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MADIHKQELD DHHHHSPPTH LCINNSDSSP INLLPLAPKR EHPDNDHKTQ VVKFTAEIPK  60
TVSSIPPTRP STKDRHTKVE GRGRRIRIPA TCAARIFQLT RELGHKSDGE TIRWLLERAE  120
PAIIAATGTG TVPAIAMSVN GTLKIPTTTS SSNQDSADQS ATKKRRKRPA NSDYVDVNDA  180
VSVSVSASAS NGAVQAATVA GSPAVQQPFP PGFVPVWAIP SNAIIPGAVF MVPSVDCSST  240
RPQFFSFPTP AAPLINTTAR PISTVPSKLH TSHIQANTTN QSSSTSNSSA SKSESVMAPI  300
SSSTVTTNGK TTKQMLREFS LEIYDKEELQ FMSRSSERMK TE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-59	TCP family protein