PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023548697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 228aa MW: 25745.2 Da PI: 9.3011 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.8e-09 | 57 | 78 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_023548697.1 57 KVCRQFQRRRKCAYGDQCRYLH 78 68******************** PP | |||||||
2 | zf-CCCH | 33.3 | 8.1e-11 | 138 | 161 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC + tG C+yG+ C+FaH XP_023548697.1 138 KTRLCYPLQTTGSCPYGSVCRFAH 161 8*********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MPSKSGIPPS NNRNIGYDHE LGCMSTPALN DTHRRLPSLR GIGFHEGPLS GRSNEMKVCR 60 QFQRRRKCAY GDQCRYLHEI PEKTRAFGSS TQNYEVRIVD SGHVMNRRRG LDQLEEVRSK 120 VQTEIVVGGE IPKPVRCKTR LCYPLQTTGS CPYGSVCRFA HEEAELQKLE PFIASQRGSV 180 SDASATTSAA TQAEFGTVCK NEEPRMKQFF KSKKSKRLIA IYADWLED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-16 | C3H family protein |