PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023548618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 322aa MW: 36555.7 Da PI: 7.2586 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.7 | 3.4e-12 | 186 | 211 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF+H+ XP_023548618.1 186 YQPDICKDYKETGYCGYGDACKFMHD 211 67789********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence |
MTDTGENQQP EQVCSFFKKP TKNKNIRKRT VDEDEEDSKS SETSVLQNQK KAPKTDSKLY 60 FSSGPSKSNL TNESNVESDK PIFQFESSKE IQVHHDSRAT ATLETETDFS RDARAIRERV 120 LKQAEEALKG KGKSSGGEKL YKGVNAYVDY KAGFRREHTI SSEKAGGAHG PLRASAHIRA 180 SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKSGWQ LEKEWEEVEK ARKRKLAMKS 240 DDGDEDAAEQ SDEDEEDALP FACFICREPF VDPVVTKCKH YFCEHCALKH HAKNKKCFVC 300 NQPTLGIFNT AHEIKKKMAE SK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-154 | C3H family protein |