PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548026.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 435aa MW: 50327.1 Da PI: 6.3951

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.1	2.6e-24	109	205	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a++++++++ ++ +kk++W+ sk+m+erg+++sp+qC++k+++lnkryk+++++ +++ t++++++ +++d XP_023548026.1 109 KWTDKMVKLLITAVSYIGDDIASDYegggrrkfqiiQKKGKWKLMSKVMAERGYQVSPQQCEDKFNDLNKRYKRLNDMIGRGtTCRVVENPALLD 203 7************999999986445566778899*******************************************97799999988877 PP trihelix 84 ql 85 + XP_023548026.1 204 VI 205 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MEGSLSQEGL IPGGASYGGP DLQGSFKVHN QAQHHHLHTH QGSSVNPSTQ EGFLLLQNCD 60 HTMSLVDYSK GERCKNSQSD DEPSFNEDGI DPHNETIKGK KGLMWHRVKW TDKMVKLLIT 120 AVSYIGDDIA SDYEGGGRRK FQIIQKKGKW KLMSKVMAER GYQVSPQQCE DKFNDLNKRY 180 KRLNDMIGRG TTCRVVENPA LLDVIDYLTD KEKDDVRKIL NSKQLFYEEM CSYHNSNRLH 240 LPHDPALQRS LQLACRVRDD HDYDEPRRHQ NDDFDENEHG ETDEHDDFEE NFAPHGDDTL 300 SLGGSVKRLR RGQDFDDAHP CGNSLNSLDC NRGSHAYSQT QFAQGDIAHL ETESMKGSSS 360 QKQWMELRLL ELEDQKLQTR VEMLELEKQK FKWERVNKKK DRELEKMRMI NERMKLENER 420 VALDIKQKEI GSRIH

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MEGSLSQEGL IPGGASYGGP DLQGSFKVHN QAQHHHLHTH QGSSVNPSTQ EGFLLLQNCD  60
HTMSLVDYSK GERCKNSQSD DEPSFNEDGI DPHNETIKGK KGLMWHRVKW TDKMVKLLIT  120
AVSYIGDDIA SDYEGGGRRK FQIIQKKGKW KLMSKVMAER GYQVSPQQCE DKFNDLNKRY  180
KRLNDMIGRG TTCRVVENPA LLDVIDYLTD KEKDDVRKIL NSKQLFYEEM CSYHNSNRLH  240
LPHDPALQRS LQLACRVRDD HDYDEPRRHQ NDDFDENEHG ETDEHDDFEE NFAPHGDDTL  300
SLGGSVKRLR RGQDFDDAHP CGNSLNSLDC NRGSHAYSQT QFAQGDIAHL ETESMKGSSS  360
QKQWMELRLL ELEDQKLQTR VEMLELEKQK FKWERVNKKK DRELEKMRMI NERMKLENER  420
VALDIKQKEI GSRIH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-154	Trihelix family protein